Variant report

Variant	rs11187765
Chromosome Location	chr10:95773673-95773674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95771190..95773750-chr10:95781125..95784580,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10882378	0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882379	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882380	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187741	0.80[ASN][1000 genomes]
rs11187760	0.81[ASN][1000 genomes]
rs11187767	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594479	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11599672	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12573786	0.80[ASN][1000 genomes]
rs35038192	0.85[EUR][1000 genomes]
rs3814689	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61866000	0.80[ASN][1000 genomes]
rs61866026	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61886277	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6583922	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7071652	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7073291	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7094594	0.80[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95766800-95776600	Weak transcription	Small Intestine	intestine
2	chr10:95767000-95776800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:95767400-95776800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:95767600-95777400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:95767800-95774400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:95767800-95775200	Weak transcription	Psoas Muscle	Psoas
7	chr10:95767800-95776800	Weak transcription	HSMMtube	muscle
8	chr10:95767800-95789800	Weak transcription	Pancreas	Pancrea
9	chr10:95768400-95783000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon
11	chr10:95770200-95774600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:95770200-95776800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:95770200-95776800	Weak transcription	Fetal Stomach	stomach
14	chr10:95770200-95778000	Weak transcription	Fetal Intestine Large	intestine
15	chr10:95770200-95778000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:95770400-95783800	Weak transcription	Fetal Intestine Small	intestine
17	chr10:95770600-95776800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:95772200-95775400	Enhancers	Stomach Mucosa	stomach
19	chr10:95772200-95776600	Enhancers	A549	lung
20	chr10:95772400-95783800	Weak transcription	Right Atrium	heart
21	chr10:95773200-95774800	Enhancers	Fetal Muscle Leg	muscle
22	chr10:95773400-95776600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:95773600-95773800	Enhancers	Gastric	stomach

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