Variant report

Variant	rs12573786
Chromosome Location	chr10:95729204-95729205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10882378	0.81[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10882379	1.00[ASW][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10882380	1.00[ASW][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs11187741	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187760	0.84[ASN][1000 genomes]
rs11187765	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11187767	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11594479	0.92[JPT][hapmap]
rs11599672	0.88[ASN][1000 genomes]
rs3814689	0.81[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs61866000	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071652	1.00[JPT][hapmap]
rs7073291	0.81[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7094594	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038218	chr10:95728508-95751499	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12573786	PLCE1	cis	parietal	SCAN
rs12573786	ALDH18A1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95729200-95729400	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links