Variant report

Variant	rs11599672
Chromosome Location	chr10:95752776-95752777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr10:95751667-95753037	A549	lung:	n/a	chr10:95751988-95751997 chr10:95751987-95751996
2	RAD21	chr10:95752721-95752919	SK-N-SH_RA	brain:	n/a	n/a
3	CTCF	chr10:95752680-95752830	HEK293	kidney:	n/a	n/a
4	MAX	chr10:95751360-95754515	A549	lung:	n/a	chr10:95751988-95751997 chr10:95751987-95751996
5	CTCF	chr10:95752720-95752870	SK-N-SH_RA	brain:	n/a	n/a
6	CTCF	chr10:95752767-95752903	A549	lung:	n/a	n/a
7	RAD21	chr10:95752655-95753087	A549	lung:	n/a	n/a
8	CTCF	chr10:95752773-95752890	Hela-S3	cervix:	n/a	n/a
9	CTCF	chr10:95752740-95752890	HCPEpiC	choroid plexus:	n/a	n/a
10	CTCF	chr10:95752693-95752935	A549	lung:	n/a	n/a
11	ZNF263	chr10:95752275-95754426	HEK293-T-REx	kidney:	n/a	chr10:95752916-95752925 chr10:95752942-95752951
12	CTCF	chr10:95752740-95752890	HBMEC	blood vessel:	n/a	n/a
13	POLR2A	chr10:95751395-95753235	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95751776..95753515-chr10:95756414..95759286,2	MCF-7	breast:
2	chr10:95735923..95738579-chr10:95750156..95752956,2	MCF-7	breast:

Variant related genes	Relation type
PLCE1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10882378	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882379	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882380	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187741	0.88[ASN][1000 genomes]
rs11187760	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187765	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187767	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11594479	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12573786	0.88[ASN][1000 genomes]
rs35038192	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3814689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61866000	0.88[ASN][1000 genomes]
rs61866026	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61886277	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6583922	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7071652	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7073291	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094594	0.88[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95750000-95753200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:95750400-95753000	Enhancers	Brain Germinal Matrix	brain
3	chr10:95750400-95753000	Enhancers	Fetal Stomach	stomach
4	chr10:95750400-95753000	Enhancers	Stomach Mucosa	stomach
5	chr10:95750400-95753200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:95750600-95752800	Enhancers	Fetal Brain Female	brain
7	chr10:95750600-95753000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:95750600-95753000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:95750600-95753000	Enhancers	Fetal Heart	heart
10	chr10:95750600-95753200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:95750600-95753200	Enhancers	Fetal Intestine Small	intestine
12	chr10:95750800-95752800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:95750800-95752800	Enhancers	Brain Hippocampus Middle	brain
14	chr10:95750800-95753000	Enhancers	Fetal Intestine Large	intestine
15	chr10:95750800-95753000	Enhancers	Left Ventricle	heart
16	chr10:95750800-95753000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr10:95750800-95753000	Enhancers	Right Atrium	heart
18	chr10:95750800-95753000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr10:95751000-95753000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr10:95751000-95753000	Weak transcription	Colonic Mucosa	Colon
21	chr10:95751000-95753000	Enhancers	Fetal Lung	lung
22	chr10:95751000-95753200	Enhancers	NHDF-Ad	bronchial
23	chr10:95751200-95753000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
24	chr10:95751200-95753200	Weak transcription	Aorta	Aorta
25	chr10:95751600-95753000	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr10:95751600-95753000	Enhancers	Placenta	Placenta
27	chr10:95751600-95753000	Weak transcription	Right Ventricle	heart
28	chr10:95751600-95753200	Enhancers	Colon Smooth Muscle	Colon
29	chr10:95751800-95753800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr10:95752000-95753000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:95752000-95753000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:95752000-95753000	Enhancers	Adipose Nuclei	Adipose
33	chr10:95752000-95753000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:95752000-95753000	Weak transcription	Ovary	ovary
35	chr10:95752000-95753000	Weak transcription	Psoas Muscle	Psoas
36	chr10:95752000-95753000	Enhancers	HSMM	muscle
37	chr10:95752000-95753000	Weak transcription	HSMMtube	muscle
38	chr10:95752000-95753000	Enhancers	NH-A	brain
39	chr10:95752000-95753000	Weak transcription	NHLF	lung
40	chr10:95752000-95753200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:95752000-95753200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:95752000-95753200	Weak transcription	Hela-S3	cervix
43	chr10:95752000-95753400	Weak transcription	Lung	lung
44	chr10:95752200-95753000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:95752200-95753000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:95752200-95753400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:95752400-95753000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:95752400-95753200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:95752400-95753200	Weak transcription	Fetal Kidney	kidney
50	chr10:95752400-95753400	Flanking Active TSS	A549	lung

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