Variant report

Variant	rs35038192
Chromosome Location	chr10:95750068-95750069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:95750037-95750087	AG09309	skin:	n/a
2	chr10:95750037-95750087	HNPCEpiC	eye:	n/a
3	chr10:95750037-95750087	U87	brain:	n/a
4	chr10:95750037-95750087	A549	lung:	n/a
5	chr10:95750037-95750087	NB4	blood:	n/a
6	chr10:95750037-95750087	HEK293	kidney:	embryo
7	chr10:95750037-95750087	HAEpiC	amniotic membrane:	n/a
8	chr10:95750037-95750087	GM12892	blood:	n/a
9	chr10:95750037-95750087	HCF	heart:	n/a
10	chr10:95750037-95750087	HCM	heart:	n/a
11	chr10:95750037-95750087	MCF10A-Er-Src	breast:	n/a
12	chr10:95750037-95750087	BE2_C	brain:	n/a
13	chr10:95750037-95750087	AoSMC	blood vessel:	n/a
14	chr10:95750037-95750087	GM19239	blood:	n/a
15	chr10:95750037-95750087	PrEC	prostate:	n/a
16	chr10:95750037-95750087	IMR90	lung:	fetal
17	chr10:95750037-95750087	K562	blood:	n/a
18	chr10:95750037-95750087	HCT-116	colon:	n/a
19	chr10:95750037-95750087	GM12891	blood:	n/a
20	chr10:95750037-95750087	NHDF-neo	bronchial:	n/a
21	chr10:95750037-95750087	CMK	blood:	n/a
22	chr10:95750037-95750087	Hepatocyte	liver:	n/a
23	chr10:95750037-95750087	H1-hESC	embryonic stem cell:	embryo
24	chr10:95750037-95750087	AG04449	skin:	fetal
25	chr10:95750037-95750087	HRPEpiC	eye:	n/a
26	chr10:95750037-95750087	NT2-D1	testis:	n/a
27	chr10:95750037-95750087	AG09319	gingival:	n/a
28	chr10:95750037-95750087	SAEC	small airway:	n/a
29	chr10:95750037-95750087	Hela-S3	cervix:	n/a
30	chr10:95750037-95750087	AG10803	skin:	n/a
31	chr10:95750037-95750087	HPAEpiC	pulmonary alveolar:	n/a
32	chr10:95750037-95750087	Jurkat	blood:	n/a
33	chr10:95750037-95750087	RPTEC	kidney:	n/a
34	chr10:95750037-95750087	GM12878	blood:	n/a
35	chr10:95750037-95750087	SK-N-SH	brain:	n/a
36	chr10:95750037-95750087	AG04450	lung:	fetal
37	chr10:95750037-95750087	HL-60	blood:	n/a
38	chr10:95750037-95750087	BJ	skin:	n/a
39	chr10:95750037-95750087	HEEpiC	esophagus:	n/a
40	chr10:95750037-95750087	HRCEpiC	kidney:	n/a
41	chr10:95750037-95750087	PFSK-1	brain:	n/a
42	chr10:95750037-95750087	LNCaP	prostate:	n/a
43	chr10:95750037-95750087	HepG2	liver:	n/a
44	chr10:95750037-95750087	HRE	kidney:	n/a
45	chr10:95750037-95750087	Caco-2	colon:	n/a
46	chr10:95750037-95750087	ECC-1	luminal epithelium:	n/a
47	chr10:95750037-95750087	NHBE	bronchial:	n/a
48	chr10:95750037-95750087	HMEC	breast:	n/a
49	chr10:95750037-95750087	T-47D	breast:	n/a
50	chr10:95750037-95750087	MCF-7	breast:	n/a

No data

Variant related genes	Relation type
PLCE1	CpG island

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10882378	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10882379	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10882380	0.85[EUR][1000 genomes]
rs11187760	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11187765	0.85[EUR][1000 genomes]
rs11187767	0.85[EUR][1000 genomes]
rs11594479	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11599672	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3814689	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61866026	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61886277	0.85[EUR][1000 genomes]
rs6583922	0.85[EUR][1000 genomes]
rs7071652	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7073291	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038218	chr10:95728508-95751499	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95748000-95750600	Weak transcription	A549	lung
2	chr10:95748400-95750800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:95749400-95750600	Weak transcription	HSMMtube	muscle
4	chr10:95750000-95750800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:95750000-95753200	Enhancers	Cortex derived primary cultured neurospheres	brain

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