Variant report

Variant	rs7071652
Chromosome Location	chr10:95762596-95762597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10882378	0.82[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882379	0.82[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187760	0.82[ASN][1000 genomes]
rs11187765	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11594479	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599672	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35038192	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3814689	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61866026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61886277	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583922	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073291	0.82[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7071652	PLCE1	cis	brain	BrainEAC

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95756200-95766600	Weak transcription	Pancreas	Pancrea
2	chr10:95757600-95762600	Enhancers	Fetal Muscle Leg	muscle
3	chr10:95757800-95764200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:95759000-95766600	Enhancers	HSMM	muscle
5	chr10:95759200-95763200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:95759400-95766800	Weak transcription	Fetal Kidney	kidney
7	chr10:95759800-95764200	Weak transcription	Colonic Mucosa	Colon
8	chr10:95759800-95764800	Weak transcription	Small Intestine	intestine
9	chr10:95759800-95765400	Weak transcription	Aorta	Aorta
10	chr10:95759800-95766200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:95760000-95764200	Enhancers	HSMMtube	muscle
12	chr10:95760200-95765200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:95760400-95762600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:95760400-95765200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:95760600-95765000	Weak transcription	NH-A	brain
16	chr10:95760800-95762600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:95760800-95765200	Weak transcription	Gastric	stomach
18	chr10:95760800-95766000	Weak transcription	Fetal Lung	lung
19	chr10:95760800-95766400	Weak transcription	Fetal Heart	heart
20	chr10:95760800-95768400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:95761000-95763000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:95761000-95766000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:95761000-95766000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:95761200-95764000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:95761200-95764800	Weak transcription	Osteobl	bone
26	chr10:95761200-95765200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:95761200-95766200	Weak transcription	Adipose Nuclei	Adipose
28	chr10:95761200-95766400	Weak transcription	Ovary	ovary
29	chr10:95761800-95764400	Weak transcription	Fetal Intestine Large	intestine
30	chr10:95761800-95764800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:95761800-95771600	Weak transcription	Right Atrium	heart
32	chr10:95762000-95764400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:95762000-95766400	Weak transcription	Psoas Muscle	Psoas
34	chr10:95762200-95763400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:95762200-95764000	Weak transcription	Esophagus	oesophagus
36	chr10:95762200-95764200	Weak transcription	Fetal Intestine Small	intestine
37	chr10:95762200-95764200	Weak transcription	A549	lung
38	chr10:95762200-95764600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:95762200-95764800	Weak transcription	Stomach Mucosa	stomach
40	chr10:95762200-95765000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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