Variant report

Variant	rs11594479
Chromosome Location	chr10:95767627-95767628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:95755786..95758462-chr10:95765831..95768542,2	MCF-7	breast:
2	chr10:95766403..95768434-chr10:95786118..95787753,2	MCF-7	breast:
3	chr10:95767452..95769143-chr10:95770198..95772913,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10882378	0.89[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882379	0.89[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187760	0.82[ASN][1000 genomes]
rs11187765	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187767	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11599672	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35038192	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3814689	0.95[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61866026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61886277	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583922	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071652	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073291	0.89[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95760800-95768400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:95761800-95771600	Weak transcription	Right Atrium	heart
3	chr10:95764200-95768200	Enhancers	Fetal Intestine Small	intestine
4	chr10:95764200-95768400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:95764400-95768400	Enhancers	Fetal Intestine Large	intestine
6	chr10:95764400-95768800	Enhancers	Duodenum Mucosa	Duodenum
7	chr10:95764800-95769000	Enhancers	Stomach Mucosa	stomach
8	chr10:95765200-95767800	Enhancers	HSMMtube	muscle
9	chr10:95765600-95768400	Weak transcription	Gastric	stomach
10	chr10:95766000-95768000	Enhancers	Fetal Lung	lung
11	chr10:95766000-95768000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:95766200-95767800	Enhancers	Adipose Nuclei	Adipose
13	chr10:95766400-95767800	Enhancers	Fetal Muscle Leg	muscle
14	chr10:95766400-95767800	Enhancers	Ovary	ovary
15	chr10:95766400-95767800	Enhancers	Psoas Muscle	Psoas
16	chr10:95766600-95768000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:95766800-95767800	Weak transcription	Colonic Mucosa	Colon
18	chr10:95766800-95768400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr10:95766800-95776600	Weak transcription	Small Intestine	intestine
20	chr10:95767000-95767800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:95767000-95768400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:95767000-95768400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:95767000-95768600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:95767000-95768800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:95767000-95776800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:95767200-95767800	Enhancers	HSMM	muscle
27	chr10:95767400-95767800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:95767400-95768400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:95767400-95776800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:95767600-95767800	Enhancers	Pancreas	Pancrea
31	chr10:95767600-95768000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:95767600-95768000	Enhancers	A549	lung
33	chr10:95767600-95768400	Weak transcription	Osteobl	bone
34	chr10:95767600-95777400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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