Variant report

Variant	rs10920631
Chromosome Location	chr1:203367047-203367048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:203361371..203363134-chr1:203365960..203368253,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTG2-2	chr1:203366957-203367051	XLOC_000529
2	lnc-BTG2-2	chr1:203366957-203367051	XLOC_000529
3	lnc-BTG2-2	chr1:203366957-203367051	XLOC_000529
4	lnc-BTG2-2	chr1:203364731-203367051	NONHSAT008890
5	lnc-BTG2-2	chr1:203365121-203367051	XLOC_000529

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10800920	0.83[ASN][1000 genomes]
rs10920623	0.85[ASN][1000 genomes]
rs10920624	0.86[ASN][1000 genomes]
rs10920626	0.88[ASN][1000 genomes]
rs10920630	0.90[ASN][1000 genomes]
rs10920632	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577596	0.81[ASN][1000 genomes]
rs11578869	0.80[ASN][1000 genomes]
rs12030392	0.85[ASN][1000 genomes]
rs12044497	0.85[ASN][1000 genomes]
rs12142664	0.88[ASN][1000 genomes]
rs1935170	0.80[ASN][1000 genomes]
rs36092819	0.80[ASN][1000 genomes]
rs4391719	0.84[ASN][1000 genomes]
rs4558044	0.84[ASN][1000 genomes]
rs6428009	0.88[ASN][1000 genomes]
rs6697045	0.80[ASN][1000 genomes]
rs7543408	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795170	chr1:203356266-203371401	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1831040	chr1:203356266-203371401	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203365400-203369400	Weak transcription	Fetal Lung	lung
2	chr1:203365400-203375000	Weak transcription	Right Atrium	heart
3	chr1:203366200-203367200	Strong transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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