Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:203363383..203365308-chr1:203378338..203380043,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTG2-2	chr1:203365121-203366255	XLOC_000529
2	lnc-BTG2-2	chr1:203364732-203366255	XLOC_000529
3	lnc-BTG2-2	chr1:203364731-203367051	NONHSAT008890
4	lnc-BTG2-2	chr1:203365121-203367051	XLOC_000529

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10800920	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10920623	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10920624	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10920626	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10920631	0.90[ASN][1000 genomes]
rs10920632	0.90[ASN][1000 genomes]
rs11577596	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11578869	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12030392	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12044497	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12142664	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1935170	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2050933	0.80[ASN][1000 genomes]
rs2050934	0.80[ASN][1000 genomes]
rs36092819	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4391719	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4558044	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6428009	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6697045	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7540920	0.81[ASN][1000 genomes]
rs7543408	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795170	chr1:203356266-203371401	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1831040	chr1:203356266-203371401	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203364800-203365400	Enhancers	Adipose Nuclei	Adipose
2	chr1:203364800-203365400	Active TSS	Fetal Lung	lung
3	chr1:203364800-203365400	Active TSS	Right Atrium	heart
4	chr1:203364800-203365400	Active TSS	NHLF	lung
5	chr1:203364800-203365600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:203365000-203365400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:203365000-203365400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:203365000-203365400	Active TSS	NHDF-Ad	bronchial
9	chr1:203365000-203365400	Active TSS	Osteobl	bone
10	chr1:203365200-203365400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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