Variant report

Variant	rs11578869
Chromosome Location	chr1:203344603-203344604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10800920	0.86[ASN][1000 genomes]
rs10920623	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10920624	0.94[ASN][1000 genomes]
rs10920626	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10920630	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10920631	0.80[ASN][1000 genomes]
rs10920632	0.80[ASN][1000 genomes]
rs11577027	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11577596	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12030392	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12044497	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12142664	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1935170	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36092819	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391719	0.87[ASN][1000 genomes]
rs4558044	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6428009	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6669887	0.87[ASN][1000 genomes]
rs6679625	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6697045	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540920	0.80[ASN][1000 genomes]
rs7543408	0.90[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203334000-203347600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:203336800-203349200	Weak transcription	Pancreas	Pancrea
3	chr1:203338800-203347600	Weak transcription	Left Ventricle	heart
4	chr1:203338800-203347600	Weak transcription	Right Ventricle	heart
5	chr1:203339800-203348000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:203341800-203344800	Enhancers	Rectal Smooth Muscle	rectum
7	chr1:203341800-203345200	Enhancers	Ovary	ovary
8	chr1:203342600-203344800	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr1:203343400-203347600	Weak transcription	Fetal Kidney	kidney
10	chr1:203343600-203345000	Enhancers	Adipose Nuclei	Adipose
11	chr1:203343600-203347600	Weak transcription	Aorta	Aorta
12	chr1:203343600-203348200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:203343800-203345000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:203343800-203347800	Weak transcription	Fetal Lung	lung
15	chr1:203343800-203348600	Weak transcription	Fetal Intestine Large	intestine
16	chr1:203343800-203349000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:203344000-203345000	Enhancers	Fetal Heart	heart
18	chr1:203344200-203347600	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:203344200-203347600	Weak transcription	Fetal Stomach	stomach
20	chr1:203344200-203347800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:203344200-203348000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:203344400-203349200	Weak transcription	Monocytes-CD14+_RO01746	blood

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