Variant report

Variant	rs10920623
Chromosome Location	chr1:203352061-203352062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10800920	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10920624	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10920626	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10920630	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10920631	0.85[ASN][1000 genomes]
rs10920632	0.85[ASN][1000 genomes]
rs11577027	0.82[ASN][1000 genomes]
rs11577596	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11578869	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12030392	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12044497	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12142664	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935170	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2050933	0.82[ASN][1000 genomes]
rs2050934	0.82[ASN][1000 genomes]
rs36092819	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4391719	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4558044	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6428007	0.83[ASN][1000 genomes]
rs6428009	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6669887	0.85[ASN][1000 genomes]
rs6679625	0.85[ASN][1000 genomes]
rs6697045	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7540920	0.84[ASN][1000 genomes]
rs7543408	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10920623	PIK3C2B	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203347800-203352200	Enhancers	Right Atrium	heart
2	chr1:203348600-203352200	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:203351600-203353400	Weak transcription	Fetal Heart	heart
4	chr1:203351800-203353400	Strong transcription	Adipose Nuclei	Adipose
5	chr1:203351800-203354800	Weak transcription	Spleen	Spleen
6	chr1:203351800-203364800	Weak transcription	Ovary	ovary

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