Variant report

Variant	rs12142664
Chromosome Location	chr1:203358536-203358537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:203356921..203359878-chr1:203411866..203413368,2	K562	blood:
2	chr1:203358361..203360488-chr1:203376237..203377755,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10800920	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10920623	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10920624	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10920626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10920630	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10920631	0.88[ASN][1000 genomes]
rs10920632	0.88[ASN][1000 genomes]
rs11577596	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11578869	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12030392	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12044497	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935170	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2050933	0.82[ASN][1000 genomes]
rs2050934	0.82[ASN][1000 genomes]
rs36092819	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4391719	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4558044	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6428007	0.81[ASN][1000 genomes]
rs6428009	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669887	0.81[ASN][1000 genomes]
rs6679625	0.81[ASN][1000 genomes]
rs6697045	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7540920	0.83[ASN][1000 genomes]
rs7543408	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795170	chr1:203356266-203371401	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1831040	chr1:203356266-203371401	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203351800-203364800	Weak transcription	Ovary	ovary
2	chr1:203358000-203360200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:203358200-203359400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr1:203358200-203364800	Weak transcription	Adipose Nuclei	Adipose

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