Variant report

Variant	rs7543408
Chromosome Location	chr1:203352135-203352136
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10800920	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10920623	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10920624	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10920626	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10920630	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10920631	0.81[ASN][1000 genomes]
rs10920632	0.81[ASN][1000 genomes]
rs11577027	0.84[EUR][1000 genomes]
rs11577596	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578869	0.90[ASN][1000 genomes]
rs12030392	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12044497	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12142664	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935170	0.90[ASN][1000 genomes]
rs2050933	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2050934	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36092819	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4391719	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4558044	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6428007	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6428009	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6679625	0.85[EUR][1000 genomes]
rs6697045	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7540920	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7543408	PIK3C2B	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203347800-203352200	Enhancers	Right Atrium	heart
2	chr1:203348600-203352200	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:203351600-203353400	Weak transcription	Fetal Heart	heart
4	chr1:203351800-203353400	Strong transcription	Adipose Nuclei	Adipose
5	chr1:203351800-203354800	Weak transcription	Spleen	Spleen
6	chr1:203351800-203364800	Weak transcription	Ovary	ovary

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