Variant report

Variant	rs12030392
Chromosome Location	chr1:203351089-203351090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10800920	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10920623	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10920624	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10920626	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10920630	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10920631	0.85[ASN][1000 genomes]
rs10920632	0.85[ASN][1000 genomes]
rs11577027	0.81[ASN][1000 genomes]
rs11577596	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11578869	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12044497	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142664	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935170	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050933	0.83[ASN][1000 genomes]
rs2050934	0.83[ASN][1000 genomes]
rs36092819	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4391719	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4558044	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6428007	0.84[ASN][1000 genomes]
rs6428009	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6669887	0.84[ASN][1000 genomes]
rs6679625	0.84[ASN][1000 genomes]
rs6697045	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7540920	0.85[ASN][1000 genomes]
rs7543408	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203347600-203351600	Enhancers	Colon Smooth Muscle	Colon
2	chr1:203347600-203351800	Enhancers	Fetal Stomach	stomach
3	chr1:203347600-203351800	Enhancers	Ovary	ovary
4	chr1:203347800-203352200	Enhancers	Right Atrium	heart
5	chr1:203348000-203351800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:203348400-203351600	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr1:203348600-203352200	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:203348800-203351600	Enhancers	Fetal Heart	heart
9	chr1:203349000-203351600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:203349400-203351800	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:203349600-203352000	Enhancers	Stomach Smooth Muscle	stomach
12	chr1:203349800-203351600	Enhancers	Fetal Kidney	kidney
13	chr1:203350200-203351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:203350200-203351800	Enhancers	Primary B cells from cord blood	blood
15	chr1:203350600-203351800	Enhancers	Spleen	Spleen
16	chr1:203350800-203351200	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr1:203350800-203351800	Genic enhancers	Adipose Nuclei	Adipose
18	chr1:203350800-203351800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr1:203351000-203351200	Enhancers	Right Ventricle	heart
20	chr1:203351000-203351600	Enhancers	GM12878-XiMat	blood

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