Variant report

Variant	rs2050934
Chromosome Location	chr1:203353691-203353692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10800920	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10920623	0.82[ASN][1000 genomes]
rs10920624	0.83[ASN][1000 genomes]
rs10920626	0.82[ASN][1000 genomes]
rs10920630	0.80[ASN][1000 genomes]
rs11577027	0.87[ASN][1000 genomes]
rs11577596	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12030392	0.83[ASN][1000 genomes]
rs12044497	0.83[ASN][1000 genomes]
rs12142664	0.82[ASN][1000 genomes]
rs2050933	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391719	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4558044	0.86[ASN][1000 genomes]
rs6428007	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6428009	0.82[ASN][1000 genomes]
rs6669887	0.90[ASN][1000 genomes]
rs6679625	0.90[ASN][1000 genomes]
rs7540920	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7543408	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2050934	SOX13	cis	parietal	SCAN
rs2050934	PIK3C2B	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203351800-203354800	Weak transcription	Spleen	Spleen
2	chr1:203351800-203364800	Weak transcription	Ovary	ovary
3	chr1:203353400-203353800	Enhancers	Fetal Heart	heart
4	chr1:203353400-203357800	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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