Variant report

Variant	rs10946932
Chromosome Location	chr6:27470113-27470114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27438047..27443464-chr6:27468935..27473821,5	K562	blood:
2	chr6:27439182..27442586-chr6:27469972..27473821,4	K562	blood:
3	chr6:27470088..27471608-chr6:27487269..27490005,2	K562	blood:
4	chr6:27468932..27472099-chr6:27510680..27513985,4	K562	blood:
5	chr6:27469986..27472017-chr6:27494053..27495560,2	K562	blood:
6	chr6:27099480..27102388-chr6:27469674..27472608,2	K562	blood:
7	chr6:27263790..27266292-chr6:27469077..27471199,2	MCF-7	breast:
8	chr6:27445186..27449983-chr6:27468978..27472948,6	K562	blood:
9	chr6:27469947..27474974-chr6:27485508..27488698,9	K562	blood:
10	chr6:27258318..27260398-chr6:27469283..27471523,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124635	Chromatin interaction
ENSG00000096654	Chromatin interaction
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10080569	0.81[CEU][hapmap]
rs1014227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1022486	0.81[YRI][hapmap]
rs1022515	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10452601	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10484398	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs10755644	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10807020	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10807021	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10807024	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10807025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10946913	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10946914	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10946916	0.82[EUR][1000 genomes]
rs10946919	0.89[ASN][1000 genomes]
rs10946920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs10946921	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10946931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10946933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11968825	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11970336	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12199110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs12206045	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12212293	0.86[EUR][1000 genomes]
rs12213598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215117	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12524409	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12529839	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12662076	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs13201443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13201965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13201985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13212050	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215560	0.99[ASN][1000 genomes]
rs13217162	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13217248	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13217798	0.83[EUR][1000 genomes]
rs13220155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1534937	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1883216	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs1883404	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1883405	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1985818	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2015648	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2049944	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2049945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2064219	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2076305	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2092120	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs2092122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs2103557	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2142705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2143062	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2179154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2205831	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2206250	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2206251	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2206252	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2223463	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2223464	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2235252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[ASN][1000 genomes]
rs2235254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[ASN][1000 genomes]
rs2272814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2272815	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2272816	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2294308	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[ASN][1000 genomes]
rs2294309	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[ASN][1000 genomes]
rs2393929	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2393931	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2893917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35394453	0.91[ASN][1000 genomes]
rs3734574	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3734575	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4305708	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4358616	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs4455661	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4478400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4504471	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4562132	0.87[CEU][hapmap]
rs4711147	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4711148	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4711153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713086	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4713092	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4713104	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713105	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4713106	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4713107	0.88[ASN][1000 genomes]
rs4713109	0.99[ASN][1000 genomes]
rs62401365	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6456774	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6456777	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6456778	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6456781	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6456785	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6456786	0.91[ASN][1000 genomes]
rs6456788	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6456789	0.92[ASN][1000 genomes]
rs6650992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6899950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs6903282	0.98[ASN][1000 genomes]
rs6904844	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6904883	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6911865	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6915934	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6918131	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6918794	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6920010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6920362	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6920408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6920733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6921071	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6923108	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6923539	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6929812	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6931659	0.95[ASN][1000 genomes]
rs6933354	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6934748	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6934985	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6936356	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6936539	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6938943	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs726830	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7509	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs764460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs764461	0.92[ASN][1000 genomes]
rs766092	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7741031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7743443	0.92[ASN][1000 genomes]
rs7743465	0.92[ASN][1000 genomes]
rs7744110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs7745380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7747283	0.86[EUR][1000 genomes]
rs7748366	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs7750795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7754411	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7754678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7754724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs7754977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7756216	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7756377	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759001	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7761989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs7764070	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7764081	0.80[YRI][hapmap]
rs7764634	0.88[ASN][1000 genomes]
rs7771590	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7774613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7776338	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9357037	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9461380	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9461386	0.86[ASN][1000 genomes]
rs9468101	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468111	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468115	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468117	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468140	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9468141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[ASN][1000 genomes]
rs980960	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs980961	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs980962	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs980963	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv462665	chr6:27458013-27547792	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv601203	chr6:27458013-27547792	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs10946932	ZNF391	cis	lung	GTEx
rs10946932	ZNF391	cis	Nerve Tibial	GTEx
rs10946932	ZNF391	cis	Esophagus Muscularis	GTEx
rs10946932	ZNF391	cis	Esophagus Mucosa	GTEx
rs10946932	ZNF391	cis	Artery Tibial	GTEx
rs10946932	ZNF391	cis	Skin Sun Exposed Lower leg	GTEx
rs10946932	BRP44	trans	lymphoblastoid	RTeQTL
rs10946932	ZNF391	cis	Heart Left Ventricle	GTEx

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27463800-27470200	Weak transcription	Right Atrium	heart
2	chr6:27466200-27470200	Weak transcription	Pancreas	Pancrea
3	chr6:27467800-27472000	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:27469200-27470200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:27469400-27471600	Active TSS	K562	blood
6	chr6:27469400-27471800	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr6:27469400-27472000	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:27469800-27470200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:27469800-27470600	Flanking Active TSS	Dnd41	blood
10	chr6:27469800-27471400	Active TSS	GM12878-XiMat	blood
11	chr6:27469800-27471800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:27469800-27472000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:27469800-27472000	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr6:27469800-27472000	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr6:27470000-27470200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:27470000-27470200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:27470000-27470200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:27470000-27470200	Active TSS	Primary T cells fromperipheralblood	blood
19	chr6:27470000-27470200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:27470000-27470200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:27470000-27470200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:27470000-27470200	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
23	chr6:27470000-27470200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:27470000-27470200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:27470000-27470200	Enhancers	Adipose Nuclei	Adipose
26	chr6:27470000-27470200	Active TSS	Brain Hippocampus Middle	brain
27	chr6:27470000-27470200	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:27470000-27470200	Active TSS	Brain Substantia Nigra	brain
29	chr6:27470000-27470200	Active TSS	Duodenum Mucosa	Duodenum
30	chr6:27470000-27470200	Bivalent Enhancer	Fetal Intestine Large	intestine
31	chr6:27470000-27470200	Enhancers	Fetal Intestine Small	intestine
32	chr6:27470000-27470200	Bivalent/Poised TSS	Thymus	Thymus
33	chr6:27470000-27470200	Flanking Active TSS	A549	lung
34	chr6:27470000-27470200	Active TSS	Hela-S3	cervix
35	chr6:27470000-27470200	Bivalent Enhancer	HepG2	liver
36	chr6:27470000-27470200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
37	chr6:27470000-27470200	Active TSS	NHDF-Ad	bronchial
38	chr6:27470000-27470400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:27470000-27470400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
40	chr6:27470000-27470400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr6:27470000-27470400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:27470000-27470400	Bivalent Enhancer	Stomach Mucosa	stomach
43	chr6:27470000-27470400	Flanking Active TSS	NHEK	skin
44	chr6:27470000-27470600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:27470000-27470600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
46	chr6:27470000-27470600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr6:27470000-27470600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr6:27470000-27470600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr6:27470000-27470800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:27470000-27471000	Active TSS	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links