Variant report

Variant	rs4562132
Chromosome Location	chr6:27343285-27343286
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:40)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:40 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:27342774-27343299	ECC-1	luminal epithelium:	n/a	n/a
2	MAX	chr6:27342791-27343333	K562	blood:	n/a	n/a
3	IRF1	chr6:27342916-27343909	K562	blood:	n/a	chr6:27343629-27343650
4	YY1	chr6:27342796-27343319	ECC-1	luminal epithelium:	n/a	n/a
5	TAF1	chr6:27342647-27343345	ECC-1	luminal epithelium:	n/a	n/a
6	ARID3A	chr6:27343081-27343860	K562	blood:	n/a	n/a
7	IRF1	chr6:27342871-27343575	K562	blood:	n/a	n/a
8	HCFC1	chr6:27342739-27343965	Hela-S3	cervix:	n/a	n/a
9	HCFC1	chr6:27342253-27343723	K562	blood:	n/a	n/a
10	JUND	chr6:27342802-27343844	K562	blood:	n/a	n/a
11	POLR2A	chr6:27342845-27343290	MCF10A-Er-Src	breast:	n/a	n/a
12	ZNF143	chr6:27342843-27343316	K562	blood:	n/a	chr6:27343035-27343053 chr6:27343114-27343123 chr6:27343037-27343046 chr6:27343035-27343044
13	TCF7L2	chr6:27342959-27343307	MCF-7	breast:	n/a	n/a
14	POLR2A	chr6:27342693-27343319	K562	blood:	n/a	n/a
15	MAZ	chr6:27343024-27343302	HepG2	liver:	n/a	n/a
16	TCF7L2	chr6:27342851-27343299	HCT-116	colon:	n/a	n/a
17	FOS	chr6:27343037-27343304	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr6:27342694-27343436	SK-N-MC	brain:	n/a	n/a
19	ZC3H11A	chr6:27342980-27343363	K562	blood:	n/a	n/a
20	POLR2A	chr6:27342799-27343292	K562	blood:	n/a	n/a
21	IRF1	chr6:27342902-27343906	K562	blood:	n/a	chr6:27343629-27343650
22	TBL1XR1	chr6:27342794-27343509	K562	blood:	n/a	n/a
23	MXI1	chr6:27342437-27343434	SK-N-SH	brain:	n/a	n/a
24	TCF7L2	chr6:27343018-27343379	HEK293	kidney:	n/a	n/a
25	MAX	chr6:27342790-27343287	MCF-7	breast:	n/a	n/a
26	JUND	chr6:27342890-27343329	H1-hESC	embryonic stem cell:	n/a	n/a
27	CUX1	chr6:27343089-27343813	K562	blood:	n/a	n/a
28	POLR2A	chr6:27342771-27343612	MCF10A-Er-Src	breast:	n/a	n/a
29	YY1	chr6:27342612-27343308	HepG2	liver:	n/a	n/a
30	HEY1	chr6:27342855-27343345	K562	blood:	n/a	n/a
31	EP300	chr6:27343073-27343820	K562	blood:	n/a	chr6:27343215-27343223
32	CBX3	chr6:27342760-27343362	K562	blood:	n/a	n/a
33	MXI1	chr6:27342945-27343503	K562	blood:	n/a	n/a
34	MAZ	chr6:27342247-27343878	K562	blood:	n/a	n/a
35	FOS	chr6:27342910-27343301	MCF10A-Er-Src	breast:	n/a	n/a
36	MAX	chr6:27342782-27343290	ECC-1	luminal epithelium:	n/a	n/a
37	NR2F2	chr6:27342419-27343946	K562	blood:	n/a	n/a
38	JUN	chr6:27343197-27343345	H1-hESC	embryonic stem cell:	n/a	n/a
39	MAFK	chr6:27343009-27343866	K562	blood:	n/a	n/a
40	RCOR1	chr6:27342896-27343310	K562	blood:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27337172..27339325-chr6:27341568..27344928,3	K562	blood:
2	chr6:27342508..27344098-chr6:27729808..27732720,2	K562	blood:
3	chr6:27114024..27116946-chr6:27342885..27344567,2	K562	blood:
4	chr6:27200503..27203142-chr6:27342882..27344884,2	K562	blood:
5	chr6:27342727..27344424-chr6:27438999..27440898,2	MCF-7	breast:
6	chr6:27115446..27117075-chr6:27342528..27344567,2	K562	blood:
7	chr6:27326798..27329465-chr6:27342926..27345023,2	K562	blood:
8	chr6:27342371..27343890-chr6:27355850..27358027,2	K562	blood:
9	chr6:27342399..27344013-chr6:27374459..27376569,2	K562	blood:
10	chr6:27343258..27344900-chr6:27355145..27357535,2	MCF-7	breast:
11	chr6:27343208..27345684-chr6:27358840..27361489,2	K562	blood:

No data

Variant related genes	Relation type
ZNF204P	TF binding region
ENSG00000124613	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000237154	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000204789	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000271755	Chromatin interaction
ENSG00000096654	Chromatin interaction

Extended variants
information (count: 205 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs10080555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10080558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10080567	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10080569	0.91[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10080571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10080814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1014227	0.85[CEU][hapmap]
rs1022515	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1022517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1022518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10484396	0.90[ASN][1000 genomes]
rs10484397	0.88[ASN][1000 genomes]
rs10755644	0.92[CEU][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10807020	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10807021	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10807022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10807023	0.88[ASN][1000 genomes]
rs10807025	0.87[CEU][hapmap]
rs10946913	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10946914	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10946916	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10946917	0.90[ASN][1000 genomes]
rs10946918	0.92[ASN][1000 genomes]
rs10946921	0.85[CEU][hapmap]
rs10946931	0.87[CEU][hapmap]
rs10946932	0.87[CEU][hapmap]
rs10946933	0.85[CEU][hapmap]
rs11966173	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11968825	0.93[CEU][hapmap]
rs12195788	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12197858	0.88[ASN][1000 genomes]
rs12200018	0.88[ASN][1000 genomes]
rs12205189	0.92[ASN][1000 genomes]
rs12212288	0.92[ASN][1000 genomes]
rs12212293	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12213598	0.85[CEU][hapmap]
rs12525255	0.94[ASN][1000 genomes]
rs12525266	0.92[ASN][1000 genomes]
rs12525544	0.92[ASN][1000 genomes]
rs12528904	0.92[ASN][1000 genomes]
rs12529840	0.90[ASN][1000 genomes]
rs12662076	0.96[ASN][1000 genomes]
rs13201443	0.87[CEU][hapmap]
rs13201965	0.87[CEU][hapmap]
rs13207099	0.92[ASN][1000 genomes]
rs13215216	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13217798	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13220155	0.85[CEU][hapmap]
rs1534936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1534937	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1569566	0.88[ASN][1000 genomes]
rs1883402	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1883404	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1883405	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1963145	0.84[AMR][1000 genomes]
rs1985818	0.86[CEU][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1987278	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1989298	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1989299	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2015648	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2049945	0.87[CEU][hapmap]
rs2064219	0.94[ASN][1000 genomes]
rs2076305	0.94[ASN][1000 genomes]
rs2142705	0.85[CEU][hapmap]
rs2143059	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2143060	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2143061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2143062	0.92[CEU][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2143063	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2179154	1.00[CEU][hapmap]
rs2179362	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2206250	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2206251	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2206252	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2206253	0.90[ASN][1000 genomes]
rs2206254	0.88[ASN][1000 genomes]
rs2223463	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2223464	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2272814	0.85[CEU][hapmap]
rs2393927	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2393928	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2393929	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2393930	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2393931	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2393932	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2893916	0.90[ASN][1000 genomes]
rs2893917	0.87[CEU][hapmap]
rs34185469	0.92[ASN][1000 genomes]
rs3734574	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734575	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3918438	0.86[ASN][1000 genomes]
rs4128497	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4305708	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4339442	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4455661	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4478400	0.86[CEU][hapmap]
rs4504471	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4516940	0.94[ASN][1000 genomes]
rs4579353	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4711147	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711148	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711150	0.92[ASN][1000 genomes]
rs4711151	0.93[ASN][1000 genomes]
rs4711153	0.86[CEU][hapmap]
rs4713084	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713085	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713086	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713088	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713089	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713090	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713092	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713093	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4713094	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713096	0.91[ASN][1000 genomes]
rs4713097	0.94[ASN][1000 genomes]
rs4713101	0.84[ASN][1000 genomes]
rs4713105	0.81[CEU][hapmap]
rs4713106	0.92[CEU][hapmap]
rs55705181	0.86[ASN][1000 genomes]
rs57125518	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57647048	0.88[ASN][1000 genomes]
rs62401131	0.88[ASN][1000 genomes]
rs62401133	0.85[ASN][1000 genomes]
rs6456774	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6456775	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6456776	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6456777	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6456778	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6456779	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6456781	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6456784	0.92[ASN][1000 genomes]
rs6456785	0.92[ASN][1000 genomes]
rs6456790	0.86[CEU][hapmap]
rs6650992	0.87[CEU][hapmap]
rs6899780	0.88[ASN][1000 genomes]
rs6900278	0.82[ASN][1000 genomes]
rs6901629	0.96[ASN][1000 genomes]
rs6903254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6904883	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6908086	0.88[ASN][1000 genomes]
rs6908553	0.94[ASN][1000 genomes]
rs6912091	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6913122	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6914542	0.88[ASN][1000 genomes]
rs6914585	0.88[ASN][1000 genomes]
rs6915934	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6920010	0.87[CEU][hapmap]
rs6920362	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6920408	0.85[CEU][hapmap]
rs6920733	0.93[CEU][hapmap]
rs6921071	0.87[CEU][hapmap]
rs6923108	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923539	0.86[CEU][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6925606	0.92[ASN][1000 genomes]
rs6926142	0.90[ASN][1000 genomes]
rs6928314	0.92[ASN][1000 genomes]
rs6929812	0.92[ASN][1000 genomes]
rs6934748	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6934933	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6934985	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6935116	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6935118	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6936356	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936539	0.92[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936951	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6938943	0.94[ASN][1000 genomes]
rs760880	0.88[ASN][1000 genomes]
rs766092	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7738512	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7741031	0.85[CEU][hapmap]
rs7747283	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7747444	0.90[ASN][1000 genomes]
rs7750795	0.85[CEU][hapmap]
rs7754086	0.92[ASN][1000 genomes]
rs7754411	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754977	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7759001	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7771598	0.92[ASN][1000 genomes]
rs7774613	0.87[CEU][hapmap]
rs9357035	0.88[ASN][1000 genomes]
rs9357037	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368504	0.88[ASN][1000 genomes]
rs9368505	0.89[ASN][1000 genomes]
rs9368508	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461375	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9461378	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461380	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9468079	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9468100	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468101	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468111	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9468112	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468115	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9468117	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9468121	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs979352	0.88[ASN][1000 genomes]
rs979353	0.88[ASN][1000 genomes]
rs980960	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs980961	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs980962	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs980963	0.91[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs4562132	ZNF391	cis	Skin Sun Exposed Lower leg	GTEx
rs4562132	ZNF391	cis	Artery Tibial	GTEx
rs4562132	ZNF391	cis	Thyroid	GTEx
rs4562132	ZNF391	Cis_1M	lymphoblastoid	RTeQTL
rs4562132	ZNF391	cis	lung	GTEx
rs4562132	ZNF391	cis	Whole Blood	GTEx
rs4562132	ZNF391	cis	Esophagus Muscularis	GTEx
rs4562132	ZNF391	cis	Artery Aorta	GTEx
rs4562132	ZNF391	cis	Heart Left Ventricle	GTEx
rs4562132	ZNF391	cis	Adipose Subcutaneous	GTEx
rs4562132	ZNF391	cis	Esophagus Mucosa	GTEx
rs4562132	ZNF391	cis	Muscle Skeletal	GTEx
rs4562132	ZNF391	cis	Nerve Tibial	GTEx

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27341800-27343800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:27341800-27343800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr6:27342000-27343400	Active TSS	H1 Cell Line	embryonic stem cell
4	chr6:27342000-27343400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
5	chr6:27342000-27343400	Active TSS	Brain Cingulate Gyrus	brain
6	chr6:27342000-27343400	Active TSS	Fetal Kidney	kidney
7	chr6:27342000-27343600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr6:27342000-27343600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:27342000-27343800	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr6:27342000-27343800	Active TSS	Aorta	Aorta
11	chr6:27342000-27343800	Active TSS	Colonic Mucosa	Colon
12	chr6:27342000-27343800	Active TSS	Ovary	ovary
13	chr6:27342000-27344000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:27342200-27343400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:27342200-27343400	Active TSS	Fetal Intestine Large	intestine
16	chr6:27342200-27343400	Active TSS	Fetal Intestine Small	intestine
17	chr6:27342200-27343400	Active TSS	Rectal Smooth Muscle	rectum
18	chr6:27342200-27343600	Active TSS	Muscle Satellite Cultured Cells	--
19	chr6:27342200-27343600	Active TSS	Psoas Muscle	Psoas
20	chr6:27342200-27343600	Active TSS	NHDF-Ad	bronchial
21	chr6:27342200-27343600	Active TSS	NHLF	lung
22	chr6:27342200-27343800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:27342200-27343800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:27342200-27343800	Active TSS	Colon Smooth Muscle	Colon
25	chr6:27342200-27343800	ZNF genes & repeats	GM12878-XiMat	blood
26	chr6:27342200-27344000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:27342200-27344000	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr6:27342200-27344000	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:27342400-27343400	Active TSS	Brain Anterior Caudate	brain
30	chr6:27342400-27343400	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr6:27342400-27343400	Active TSS	Duodenum Mucosa	Duodenum
32	chr6:27342400-27343400	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr6:27342400-27343400	Active TSS	Stomach Mucosa	stomach
34	chr6:27342400-27343400	Active TSS	K562	blood
35	chr6:27342400-27343600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:27342400-27343600	Active TSS	Fetal Brain Male	brain
37	chr6:27342400-27343600	Active TSS	Right Ventricle	heart
38	chr6:27342400-27343600	Active TSS	NH-A	brain
39	chr6:27342400-27343800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:27342400-27343800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:27342400-27343800	Active TSS	Brain Substantia Nigra	brain
42	chr6:27342400-27343800	Active TSS	Right Atrium	heart
43	chr6:27342400-27343800	Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr6:27342400-27343800	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr6:27342400-27344000	Active TSS	Brain Angular Gyrus	brain
46	chr6:27342400-27344000	Active TSS	Brain Hippocampus Middle	brain
47	chr6:27342400-27344000	Active TSS	Fetal Lung	lung
48	chr6:27342600-27343400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr6:27342600-27343400	Bivalent/Poised TSS	Esophagus	oesophagus
50	chr6:27342600-27343600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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