Variant report

Variant	rs7741031
Chromosome Location	chr6:27438741-27438742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27410926..27413386-chr6:27436800..27439275,2	K562	blood:
2	chr6:27403637..27406205-chr6:27438159..27440305,2	K562	blood:
3	chr6:27096577..27099024-chr6:27436212..27439059,2	K562	blood:
4	chr6:27410926..27413614-chr6:27437775..27439572,2	K562	blood:
5	chr6:27426149..27428000-chr6:27437055..27440025,2	K562	blood:
6	chr6:27434557..27436351-chr6:27436388..27438745,2	MCF-7	breast:
7	chr6:27437660..27440966-chr6:27860702..27863841,3	K562	blood:

Variant related genes	Relation type
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 200 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:196)

rs_ID	r²[population]
rs1014227	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022515	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs10452601	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484396	0.83[ASN][1000 genomes]
rs10484397	0.86[ASN][1000 genomes]
rs10484398	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10755644	0.95[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap]
rs10807020	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs10807021	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs10807023	0.86[ASN][1000 genomes]
rs10807024	0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10807025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946913	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10946914	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10946916	0.85[EUR][1000 genomes]
rs10946919	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10946920	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10946921	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10946932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10946933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11968825	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11970336	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197858	0.86[ASN][1000 genomes]
rs12199110	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12200018	0.86[ASN][1000 genomes]
rs12205189	0.82[ASN][1000 genomes]
rs12206045	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12212288	0.82[ASN][1000 genomes]
rs12212293	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12213598	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215117	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524409	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525544	0.82[ASN][1000 genomes]
rs12528904	0.82[ASN][1000 genomes]
rs12529839	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12529840	0.83[ASN][1000 genomes]
rs12662076	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs13201443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13207099	0.82[ASN][1000 genomes]
rs13212050	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13215560	0.92[ASN][1000 genomes]
rs13217162	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13217248	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13217798	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13220155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534937	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1569566	0.86[ASN][1000 genomes]
rs1883216	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1883404	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs1883405	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1985818	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2015648	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2049944	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064219	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2076305	1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2092120	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2092121	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2092122	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2103557	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2142705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143062	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2179154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2205831	0.83[ASN][1000 genomes]
rs2206250	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap]
rs2206251	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2206252	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2206253	0.83[ASN][1000 genomes]
rs2206254	0.86[ASN][1000 genomes]
rs2223463	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2223464	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2235252	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2235254	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2272814	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272815	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2272816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2294308	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2294309	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.91[ASN][1000 genomes]
rs2393929	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2393931	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2893916	0.83[ASN][1000 genomes]
rs2893917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34185469	0.82[ASN][1000 genomes]
rs35394453	0.99[ASN][1000 genomes]
rs3734574	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs3734575	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs4305708	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4358616	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs4455661	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs4478400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4504471	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs4562132	0.85[CEU][hapmap]
rs4711147	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4711148	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs4711151	0.81[ASN][1000 genomes]
rs4711153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713086	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4713092	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs4713101	0.82[ASN][1000 genomes]
rs4713104	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4713106	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713107	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713109	0.92[ASN][1000 genomes]
rs55705181	0.84[ASN][1000 genomes]
rs57647048	0.86[ASN][1000 genomes]
rs62401365	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456774	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6456777	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs6456778	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs6456781	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs6456784	0.82[ASN][1000 genomes]
rs6456785	1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs6456786	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6456788	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6456789	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6456791	0.85[ASN][1000 genomes]
rs6650992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6899780	0.86[ASN][1000 genomes]
rs6899950	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6903282	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6904844	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6904883	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs6908086	0.86[ASN][1000 genomes]
rs6911865	0.92[ASN][1000 genomes]
rs6914542	0.86[ASN][1000 genomes]
rs6914585	0.86[ASN][1000 genomes]
rs6915934	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs6918131	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6918794	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6920010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920362	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs6920408	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921071	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923108	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs6923539	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs6926142	0.83[ASN][1000 genomes]
rs6928314	0.82[ASN][1000 genomes]
rs6929812	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6931659	0.88[ASN][1000 genomes]
rs6933354	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6934748	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs6934985	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs6936356	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6936539	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs6938689	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6938943	1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap]
rs726830	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7509	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[YRI][hapmap];0.98[ASN][1000 genomes]
rs760880	0.86[ASN][1000 genomes]
rs764460	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs764461	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs766092	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs7743443	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7743465	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7744110	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7745380	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747283	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7747444	0.83[ASN][1000 genomes]
rs7748366	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7750795	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754086	0.82[ASN][1000 genomes]
rs7754411	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs7754678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7754724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7754977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7756216	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756377	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7759001	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs7761989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7764070	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764634	0.95[ASN][1000 genomes]
rs7771590	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7771598	0.82[ASN][1000 genomes]
rs7772160	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7774613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7776338	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9357037	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap]
rs9461380	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468101	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468111	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468115	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468117	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468134	0.85[AFR][1000 genomes]
rs9468140	0.92[ASN][1000 genomes]
rs9468141	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.92[ASN][1000 genomes]
rs979352	0.86[ASN][1000 genomes]
rs979353	0.86[ASN][1000 genomes]
rs980960	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs980961	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs980962	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs980963	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
3	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv883508	chr6:27434220-27455625	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs7741031	ZNF391	cis	Heart Left Ventricle	GTEx
rs7741031	BRP44	trans	lymphoblastoid	RTeQTL
rs7741031	ZNF391	cis	parietal	SCAN
rs7741031	ZNF391	cis	Esophagus Muscularis	GTEx
rs7741031	ZNF391	cis	Nerve Tibial	GTEx
rs7741031	ZNF391	cis	Skin Sun Exposed Lower leg	GTEx
rs7741031	ZNF391	cis	lymphoblastoid	seeQTL
rs7741031	ZNF391	cis	lung	GTEx
rs7741031	ZSCAN23	cis	cerebellum	SCAN
rs7741031	ZNF323	cis	parietal	SCAN
rs7741031	ZNF391	cis	cerebellum	SCAN
rs7741031	ZNF391	cis	Artery Tibial	GTEx
rs7741031	ZNF391	cis	Esophagus Mucosa	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27424000-27439800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:27425000-27438800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:27425600-27439400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:27427800-27440000	Weak transcription	Esophagus	oesophagus
5	chr6:27428400-27438800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:27428800-27439800	Weak transcription	Pancreas	Pancrea
7	chr6:27429400-27439000	Weak transcription	Stomach Mucosa	stomach
8	chr6:27429600-27439800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:27429600-27440000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:27429600-27440000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:27429800-27439000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:27429800-27439800	Weak transcription	Colonic Mucosa	Colon
13	chr6:27430000-27438800	Weak transcription	Brain Angular Gyrus	brain
14	chr6:27431400-27439400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:27431800-27438800	Strong transcription	HSMM	muscle
16	chr6:27432800-27438800	Weak transcription	NHLF	lung
17	chr6:27433400-27439000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr6:27433400-27439400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:27434800-27438800	Weak transcription	NH-A	brain
20	chr6:27435200-27438800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:27435400-27439000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:27435400-27439200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:27435400-27439200	Transcr. at gene 5' and 3'	Dnd41	blood
24	chr6:27435400-27440000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:27435600-27438800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:27435600-27438800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:27435600-27438800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr6:27435600-27438800	Weak transcription	NHEK	skin
29	chr6:27435600-27439200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:27435600-27439200	Weak transcription	Adipose Nuclei	Adipose
31	chr6:27435600-27439400	Strong transcription	Primary B cells from cord blood	blood
32	chr6:27435600-27439400	Weak transcription	Psoas Muscle	Psoas
33	chr6:27435600-27439400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:27435600-27439600	Weak transcription	Aorta	Aorta
35	chr6:27435600-27439800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:27435600-27440000	Weak transcription	Left Ventricle	heart
37	chr6:27435600-27440000	Weak transcription	Ovary	ovary
38	chr6:27435600-27440000	Weak transcription	Spleen	Spleen
39	chr6:27435800-27438800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:27435800-27438800	Weak transcription	Fetal Intestine Large	intestine
41	chr6:27435800-27438800	Weak transcription	Fetal Stomach	stomach
42	chr6:27435800-27438800	Weak transcription	Thymus	Thymus
43	chr6:27435800-27439200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:27435800-27439400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:27435800-27439800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:27435800-27439800	Weak transcription	Right Ventricle	heart
47	chr6:27435800-27440000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:27435800-27440000	Weak transcription	Gastric	stomach
49	chr6:27435800-27440000	Weak transcription	Lung	lung
50	chr6:27435800-27440000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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