Variant report

Variant	rs4478400
Chromosome Location	chr6:27486303-27486304
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MBD4	chr6:27486242-27487452	HepG2	liver:	n/a	n/a
2	YY1	chr6:27486060-27486512	SK-N-SH_RA	brain:	n/a	n/a
3	NR2F2	chr6:27486116-27487695	K562	blood:	n/a	n/a
4	CTCF	chr6:27486260-27486410	HepG2	liver:	n/a	n/a
5	YY1	chr6:27486136-27486410	GM12891	blood:	n/a	n/a
6	CBX3	chr6:27486206-27487598	K562	blood:	n/a	n/a
7	YY1	chr6:27486087-27486463	GM12892	blood:	n/a	n/a
8	MAX	chr6:27486126-27487473	NB4	blood:	n/a	n/a
9	SMC3	chr6:27485910-27487616	SK-N-SH	brain:	n/a	chr6:27486744-27486758
10	MYC	chr6:27486221-27486406	MCF10A-Er-Src	breast:	n/a	n/a
11	REST	chr6:27486088-27486507	HL-60	blood:	n/a	n/a
12	YY1	chr6:27486082-27486429	H1-hESC	embryonic stem cell:	n/a	n/a
13	YY1	chr6:27486065-27486473	ECC-1	luminal epithelium:	n/a	n/a
14	YY1	chr6:27486042-27486414	GM12878	blood:	n/a	n/a
15	YY1	chr6:27486146-27486461	K562	blood:	n/a	n/a
16	YY1	chr6:27485982-27486481	H1-hESC	embryonic stem cell:	n/a	n/a
17	YY1	chr6:27486076-27486463	GM12891	blood:	n/a	n/a
18	MYC	chr6:27486259-27487493	K562	blood:	n/a	n/a
19	MYC	chr6:27486175-27487485	NB4	blood:	n/a	n/a
20	CTCF	chr6:27486260-27486410	BE2_C	brain:	n/a	n/a
21	MAX	chr6:27486067-27487757	HCT-116	colon:	n/a	n/a
22	E2F6	chr6:27486191-27486405	K562	blood:	n/a	n/a
23	CTCF	chr6:27486294-27486374	Medullo	brain:	n/a	n/a
24	YY1	chr6:27486063-27486477	GM12892	blood:	n/a	n/a
25	YY1	chr6:27486127-27486513	SK-N-SH	brain:	n/a	n/a
26	YY1	chr6:27486074-27486455	GM12878	blood:	n/a	n/a
27	TEAD4	chr6:27485996-27487564	K562	blood:	n/a	n/a
28	YY1	chr6:27486068-27486499	HepG2	liver:	n/a	n/a
29	MYBL2	chr6:27486220-27487637	HepG2	liver:	n/a	n/a
30	CTCF	chr6:27486300-27486450	AG04449	skin:	n/a	n/a
31	CTCF	chr6:27486220-27486370	WERI-Rb-1	eye:	n/a	n/a
32	RAD21	chr6:27485931-27487579	SK-N-SH	brain:	n/a	chr6:27486743-27486762
33	CTCF	chr6:27486279-27486347	MCF-7	breast:	n/a	n/a
34	YY1	chr6:27486094-27486527	ECC-1	luminal epithelium:	n/a	n/a
35	KAP1	chr6:27486163-27487416	HEK293	kidney:	n/a	n/a
36	SIN3AK20	chr6:27486148-27486392	SK-N-SH	brain:	n/a	n/a
37	YY1	chr6:27486126-27486431	HepG2	liver:	n/a	n/a
38	YY1	chr6:27486093-27486430	K562	blood:	n/a	n/a
39	SREBP2	chr6:27486189-27488121	GM12878	blood:	n/a	n/a
40	MAX	chr6:27486048-27486508	K562	blood:	n/a	n/a
41	BHLHE40	chr6:27486257-27487480	K562	blood:	n/a	chr6:27486285-27486301
42	MYC	chr6:27486211-27486339	MCF-7	breast:	n/a	n/a
43	CTCF	chr6:27486040-27487602	SK-N-SH	brain:	n/a	chr6:27486745-27486758 chr6:27486742-27486760
44	YY1	chr6:27486131-27486430	A549	lung:	n/a	n/a
45	CTCF	chr6:27486297-27486327	MCF-7	breast:	n/a	n/a
46	YY1	chr6:27485990-27486440	SK-N-SH_RA	brain:	n/a	n/a
47	STAT3	chr6:27486230-27486374	MCF10A-Er-Src	breast:	n/a	n/a
48	CTCF	chr6:27486121-27487780	A549	lung:	n/a	chr6:27486745-27486758 chr6:27486742-27486760

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27462160..27465243-chr6:27483150..27486620,3	K562	blood:
2	chr6:27484584..27488332-chr6:27510718..27517448,9	K562	blood:
3	chr6:27485761..27488358-chr6:27559045..27561077,2	K562	blood:
4	chr6:27475135..27475691-chr6:27486008..27486713,2	K562	blood:
5	chr6:27485174..27486932-chr6:27777481..27778994,2	K562	blood:
6	chr6:27485746..27487323-chr6:27576399..27577877,8	MCF-7	breast:
7	chr6:27485668..27488646-chr6:27758590..27761132,3	K562	blood:
8	chr6:27484707..27486916-chr6:27761947..27763792,2	MCF-7	breast:
9	chr6:27484573..27488622-chr6:27496646..27500202,4	K562	blood:
10	chr6:27469947..27474974-chr6:27485508..27488698,9	K562	blood:
11	chr6:26029984..26031821-chr6:27485687..27487793,2	K562	blood:
12	chr6:27483867..27487300-chr6:27514460..27517448,4	K562	blood:
13	chr6:27485493..27487721-chr6:27575834..27578755,2	MCF-7	breast:
14	chr6:27484948..27487282-chr6:27561197..27562747,2	K562	blood:
15	chr6:27485174..27486932-chr6:27777273..27778994,3	K562	blood:
16	chr6:27485284..27487587-chr6:27859462..27861025,2	K562	blood:

No data

Variant related genes	Relation type
HNRNPA1P1	TF binding region
ENSG00000270666	TF binding region
ENSG00000203813	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs1014227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1022486	0.85[YRI][hapmap]
rs1022515	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10452601	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484398	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10755644	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10807020	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10807021	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10807024	0.86[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs10807025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10946913	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10946914	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10946916	0.81[EUR][1000 genomes]
rs10946919	0.86[ASN][1000 genomes]
rs10946920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs10946921	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10946931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10946932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10946933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11968825	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11970336	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199110	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs12206045	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12212293	0.86[EUR][1000 genomes]
rs12213598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12215117	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12524409	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529839	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12662076	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13201443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13201965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13201985	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs13212050	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13215560	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13217162	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13217248	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13217798	0.83[EUR][1000 genomes]
rs13220155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1534937	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1883216	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1883404	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1883405	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1985818	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2015648	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2049944	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2049945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2064219	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2076305	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2092120	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2092121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs2092122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs2103557	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2142705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2143062	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2179154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2205831	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2206250	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2206251	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2206252	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2223463	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2223464	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2235252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[ASN][1000 genomes]
rs2235254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[ASN][1000 genomes]
rs2272814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2272815	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2272816	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2294308	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2294309	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[ASN][1000 genomes]
rs2393929	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2393931	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2893917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35394453	0.88[ASN][1000 genomes]
rs3734574	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3734575	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4305708	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4358616	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4455661	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4504471	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4562132	0.86[CEU][hapmap]
rs4711147	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4711148	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4711153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4713086	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4713092	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4713104	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4713105	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs4713106	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4713107	0.85[ASN][1000 genomes]
rs4713109	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62401365	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6456774	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6456777	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6456778	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6456781	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6456785	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6456786	0.88[ASN][1000 genomes]
rs6456788	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6456789	0.90[ASN][1000 genomes]
rs6650992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6899950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs6903282	0.95[ASN][1000 genomes]
rs6904844	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6904883	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6911865	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6915934	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6918131	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6918794	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6920010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6920362	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6920408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6920733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6921071	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6923108	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6923539	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs6929812	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6931659	0.92[ASN][1000 genomes]
rs6933354	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6934748	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6934985	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6936356	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6936539	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6938943	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs726830	0.90[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7509	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs764460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs764461	0.90[ASN][1000 genomes]
rs766092	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7741031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7743443	0.90[ASN][1000 genomes]
rs7743465	0.90[ASN][1000 genomes]
rs7744110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs7745380	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7747283	0.86[EUR][1000 genomes]
rs7748366	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs7750795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7754411	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7754678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7754724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs7754977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7756216	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7756377	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7759001	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7761989	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7764070	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7764634	0.85[ASN][1000 genomes]
rs7771590	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7774613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7776338	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357037	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9461380	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9461386	0.84[ASN][1000 genomes]
rs9468101	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9468111	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9468115	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9468117	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9468140	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9468141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs980960	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs980961	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs980962	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv462665	chr6:27458013-27547792	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv601203	chr6:27458013-27547792	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1030256	chr6:27477726-27605842	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1025862	chr6:27480227-27605321	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv1017347	chr6:27483816-27605842	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs4478400	ZNF391	cis	Nerve Tibial	GTEx
rs4478400	ZNF391	cis	Skin Sun Exposed Lower leg	GTEx
rs4478400	ZNF391	cis	Heart Left Ventricle	GTEx
rs4478400	BRP44	trans	lymphoblastoid	RTeQTL
rs4478400	ZNF391	cis	lung	GTEx
rs4478400	ZNF391	cis	Esophagus Muscularis	GTEx
rs4478400	ZNF391	cis	Esophagus Mucosa	GTEx
rs4478400	ZNF391	cis	Artery Tibial	GTEx

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27483600-27486400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:27485800-27486400	Flanking Active TSS	K562	blood
3	chr6:27485800-27486600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:27485800-27487400	Active TSS	Right Atrium	heart
5	chr6:27486000-27486400	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:27486000-27486400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:27486000-27486400	Flanking Active TSS	Colon Smooth Muscle	Colon
8	chr6:27486000-27486400	Bivalent Enhancer	Fetal Brain Male	brain
9	chr6:27486000-27486400	Bivalent Enhancer	Fetal Heart	heart
10	chr6:27486000-27486400	Flanking Active TSS	Fetal Intestine Large	intestine
11	chr6:27486000-27486600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:27486000-27486600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr6:27486000-27486600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr6:27486000-27486600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr6:27486000-27486600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:27486000-27486600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr6:27486000-27486600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr6:27486000-27486600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:27486000-27486600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr6:27486000-27486600	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr6:27486000-27486600	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr6:27486000-27486600	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr6:27486000-27486600	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr6:27486000-27486600	Flanking Active TSS	Fetal Intestine Small	intestine
25	chr6:27486000-27486600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr6:27486000-27486600	Flanking Active TSS	Dnd41	blood
27	chr6:27486000-27486600	Flanking Active TSS	GM12878-XiMat	blood
28	chr6:27486000-27486600	Flanking Active TSS	Hela-S3	cervix
29	chr6:27486000-27486600	Flanking Active TSS	HMEC	breast
30	chr6:27486000-27486600	Flanking Active TSS	NHEK	skin
31	chr6:27486000-27486800	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr6:27486000-27487000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr6:27486000-27487000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:27486000-27487400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr6:27486000-27487400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:27486000-27487400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:27486000-27487400	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
38	chr6:27486000-27487400	Active TSS	Right Ventricle	heart
39	chr6:27486000-27487400	Active TSS	HSMMtube	muscle
40	chr6:27486000-27487400	Active TSS	NHLF	lung
41	chr6:27486000-27487600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:27486000-27487600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:27486000-27487600	Active TSS	Aorta	Aorta
44	chr6:27486000-27487800	Active TSS	A549	lung
45	chr6:27486200-27486400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
46	chr6:27486200-27486400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:27486200-27486400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:27486200-27486400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:27486200-27486400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:27486200-27486400	Enhancers	Primary B cells from cord blood	blood

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