Variant report

Variant	rs2206250
Chromosome Location	chr6:27355842-27355843
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:27355707-27357130	NB4	blood:	n/a	chr6:27356374-27356384 chr6:27356973-27356982
2	CEBPB	chr6:27355805-27356909	ECC-1	luminal epithelium:	n/a	chr6:27356124-27356135 chr6:27356433-27356444 chr6:27355981-27355990 chr6:27356126-27356135
3	CEBPB	chr6:27355827-27356877	H1-hESC	embryonic stem cell:	n/a	chr6:27356124-27356135 chr6:27356433-27356444 chr6:27355981-27355990 chr6:27356126-27356135

No.	Distal block	Cell Line	Cell type
1	chr6:27354651..27357206-chr6:27439212..27442131,3	K562	blood:
2	chr21:27542816..27543374-chr6:27355736..27356540,2	HCT-116	colon:
3	chr6:27350962..27353140-chr6:27353482..27356207,2	MCF-7	breast:
4	chr6:27291445..27294642-chr6:27355178..27358043,3	MCF-7	breast:

Variant related genes	Relation type
ZNF391	TF binding region
ENSG00000220758	Chromatin interaction
ENSG00000142192	Chromatin interaction
ENSG00000096654	Chromatin interaction
ENSG00000273492	Chromatin interaction

Extended variants
information (count: 238 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs10080555	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10080558	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10080567	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10080569	0.92[CEU][hapmap];0.84[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10080571	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10080814	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1011665	0.83[CHD][hapmap]
rs1014227	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs1022515	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1022517	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1022518	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10484396	0.92[ASN][1000 genomes]
rs10484397	0.90[ASN][1000 genomes]
rs10484398	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs10755644	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10807020	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807021	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807022	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10807023	0.90[ASN][1000 genomes]
rs10807024	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10807025	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10946913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10946914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10946916	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10946917	0.92[ASN][1000 genomes]
rs10946918	0.94[ASN][1000 genomes]
rs10946919	0.81[ASN][1000 genomes]
rs10946920	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs10946921	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap]
rs10946931	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10946932	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10946933	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs11966173	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11968825	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12195788	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197858	0.90[ASN][1000 genomes]
rs12199110	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12200018	0.90[ASN][1000 genomes]
rs12205189	0.94[ASN][1000 genomes]
rs12212288	0.94[ASN][1000 genomes]
rs12212293	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12213598	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs12525255	0.96[ASN][1000 genomes]
rs12525266	0.94[ASN][1000 genomes]
rs12525544	0.94[ASN][1000 genomes]
rs12528904	0.94[ASN][1000 genomes]
rs12529458	0.81[CHD][hapmap]
rs12529840	0.92[ASN][1000 genomes]
rs12662076	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13201443	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs13201965	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs13201985	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13207099	0.94[ASN][1000 genomes]
rs13215216	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13217798	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13220155	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs13220817	0.83[CHD][hapmap]
rs1534936	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1534937	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1569566	0.90[ASN][1000 genomes]
rs1883216	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs1883402	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1883403	0.83[CHD][hapmap]
rs1883404	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1883405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1963145	0.83[AMR][1000 genomes]
rs1985818	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1987278	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1989298	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1989299	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2015648	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2049945	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2064219	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2076305	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2092121	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs2092122	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2142705	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs2143059	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2143060	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2143061	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143062	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2143063	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2179154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2179362	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2206251	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2206252	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206253	0.92[ASN][1000 genomes]
rs2206254	0.90[ASN][1000 genomes]
rs2223463	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223464	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235252	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs2235254	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs2272814	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs2294308	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap]
rs2294309	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap]
rs2393927	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2393928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393929	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393930	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2393931	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893916	0.92[ASN][1000 genomes]
rs2893917	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs34185469	0.94[ASN][1000 genomes]
rs3734574	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3734575	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3918438	0.88[ASN][1000 genomes]
rs4128497	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4305708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4339442	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4358616	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs4455661	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4478400	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs4504471	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4516940	0.96[ASN][1000 genomes]
rs4562132	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4579353	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711147	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711150	0.94[ASN][1000 genomes]
rs4711151	0.95[ASN][1000 genomes]
rs4711153	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4713084	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713085	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713086	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713088	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713089	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713090	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713092	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713093	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713094	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713096	0.93[ASN][1000 genomes]
rs4713097	0.96[ASN][1000 genomes]
rs4713101	0.86[ASN][1000 genomes]
rs4713105	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4713106	0.94[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap]
rs55705181	0.88[ASN][1000 genomes]
rs57125518	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57647048	0.90[ASN][1000 genomes]
rs62401131	0.90[ASN][1000 genomes]
rs62401133	0.86[ASN][1000 genomes]
rs6456774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456775	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6456776	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6456777	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6456778	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6456779	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6456781	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6456784	0.94[ASN][1000 genomes]
rs6456785	1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs6456788	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6456790	0.87[CEU][hapmap]
rs6650992	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6899780	0.90[ASN][1000 genomes]
rs6899950	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap]
rs6900278	0.84[ASN][1000 genomes]
rs6901629	0.95[ASN][1000 genomes]
rs6903254	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6904883	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908086	0.90[ASN][1000 genomes]
rs6908553	0.96[ASN][1000 genomes]
rs6912091	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6913122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914542	0.90[ASN][1000 genomes]
rs6914585	0.90[ASN][1000 genomes]
rs6915934	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6920010	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6920362	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920408	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs6920733	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs6921071	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6923108	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6923539	0.83[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6925606	0.94[ASN][1000 genomes]
rs6926142	0.92[ASN][1000 genomes]
rs6928314	0.94[ASN][1000 genomes]
rs6929812	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs6934748	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6934933	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6934985	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6935116	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6935118	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6936356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936539	0.88[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936951	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6938943	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs726830	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7509	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs760880	0.90[ASN][1000 genomes]
rs764460	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs766092	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7738512	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7741031	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap]
rs7744110	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7745380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7747283	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7747444	0.92[ASN][1000 genomes]
rs7748366	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs7750795	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap]
rs7754086	0.94[ASN][1000 genomes]
rs7754411	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754678	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7754724	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7754977	0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7759001	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7761989	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7771598	0.94[ASN][1000 genomes]
rs7772160	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7774613	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs9348765	0.86[JPT][hapmap]
rs9357035	0.88[ASN][1000 genomes]
rs9357037	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368504	0.88[ASN][1000 genomes]
rs9368505	0.90[ASN][1000 genomes]
rs9368508	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9461375	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9461378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461379	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9468079	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9468100	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468101	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9468112	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468114	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9468117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9468121	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9468141	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap]
rs979352	0.90[ASN][1000 genomes]
rs979353	0.90[ASN][1000 genomes]
rs980960	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs980962	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs980963	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv3439048	chr6:27351973-27357171	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs2206250	ZNF391	Cis_1M	lymphoblastoid	RTeQTL
rs2206250	ZNF391	cis	Whole Blood	GTEx
rs2206250	ZNF391	cis	lung	GTEx
rs2206250	ZNF391	cis	Artery Aorta	GTEx
rs2206250	ZNF391	cis	Esophagus Muscularis	GTEx
rs2206250	ZNF391	cis	Skin Sun Exposed Lower leg	GTEx
rs2206250	ZNF391	cis	Thyroid	GTEx
rs2206250	ZNF391	cis	Heart Left Ventricle	GTEx
rs2206250	ZNF391	cis	Artery Tibial	GTEx
rs2206250	ZNF391	cis	Adipose Subcutaneous	GTEx
rs2206250	ZNF391	cis	Nerve Tibial	GTEx
rs2206250	ZNF391	cis	Muscle Skeletal	GTEx
rs2206250	ZNF391	cis	Esophagus Mucosa	GTEx

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27343200-27356200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:27346800-27356200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:27355000-27357400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:27355600-27356000	Flanking Active TSS	Brain Germinal Matrix	brain
5	chr6:27355600-27356000	Active TSS	HepG2	liver
6	chr6:27355600-27356200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:27355600-27357600	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr6:27355600-27358400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:27355800-27356000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr6:27355800-27356000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr6:27355800-27356000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:27355800-27356000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:27355800-27356000	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:27355800-27356000	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:27355800-27356000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:27355800-27356000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:27355800-27356000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:27355800-27356000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr6:27355800-27356000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:27355800-27356000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:27355800-27356000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:27355800-27356000	Enhancers	Adipose Nuclei	Adipose
23	chr6:27355800-27356000	Enhancers	Liver	Liver
24	chr6:27355800-27356000	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:27355800-27356000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr6:27355800-27356000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:27355800-27356000	Enhancers	Fetal Heart	heart
28	chr6:27355800-27356000	Enhancers	Fetal Kidney	kidney
29	chr6:27355800-27356000	Flanking Active TSS	Fetal Lung	lung
30	chr6:27355800-27356000	Enhancers	Placenta	Placenta
31	chr6:27355800-27356000	Enhancers	Fetal Stomach	stomach
32	chr6:27355800-27356000	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:27355800-27356000	Enhancers	Right Atrium	heart
34	chr6:27355800-27356000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr6:27355800-27356000	Enhancers	Hela-S3	cervix
36	chr6:27355800-27356000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
37	chr6:27355800-27356000	Active TSS	NH-A	brain
38	chr6:27355800-27356000	Flanking Active TSS	Osteobl	bone
39	chr6:27355800-27356200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr6:27355800-27356200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:27355800-27356200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr6:27355800-27356200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr6:27355800-27356200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr6:27355800-27356200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:27355800-27356200	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr6:27355800-27356200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr6:27355800-27356200	Flanking Active TSS	Brain Substantia Nigra	brain
48	chr6:27355800-27356200	Flanking Active TSS	Colon Smooth Muscle	Colon
49	chr6:27355800-27356200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr6:27355800-27356200	Enhancers	Fetal Thymus	thymus

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