Variant report

Variant	rs7759001
Chromosome Location	chr6:27341409-27341410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:27341317-27341517	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27341304..27343058-chr6:27356076..27357820,2	MCF-7	breast:
2	chr6:27304529..27307497-chr6:27340384..27342346,2	K562	blood:

Variant related genes	Relation type
ZNF204P	TF binding region
ZNF391	TF binding region
ENSG00000124613	Chromatin interaction

Extended variants
information (count: 230 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:228)

rs_ID	r²[population]
rs10080555	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10080558	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10080567	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10080569	0.84[CEU][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10080571	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10080814	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1014227	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs1022515	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1022517	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1022518	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10484396	0.83[ASN][1000 genomes]
rs10484397	0.81[ASN][1000 genomes]
rs10484398	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10755644	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10807020	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10807021	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10807022	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10807023	0.81[ASN][1000 genomes]
rs10807024	0.90[JPT][hapmap]
rs10807025	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10946913	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10946914	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10946916	0.88[ASN][1000 genomes]
rs10946917	0.83[ASN][1000 genomes]
rs10946918	0.85[ASN][1000 genomes]
rs10946920	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs10946921	0.90[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs10946931	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10946932	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10946933	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs11966173	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968825	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12195788	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12197858	0.81[ASN][1000 genomes]
rs12199110	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12200018	0.81[ASN][1000 genomes]
rs12205189	0.84[ASN][1000 genomes]
rs12212288	0.84[ASN][1000 genomes]
rs12212293	0.85[ASN][1000 genomes]
rs12213598	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs12525255	0.86[ASN][1000 genomes]
rs12525266	0.85[ASN][1000 genomes]
rs12525544	0.84[ASN][1000 genomes]
rs12528904	0.84[ASN][1000 genomes]
rs12529840	0.83[ASN][1000 genomes]
rs12662076	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13201443	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13201965	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13201985	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs13207099	0.84[ASN][1000 genomes]
rs13215216	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13217798	0.86[ASN][1000 genomes]
rs13220155	0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs1534936	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1534937	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1569566	0.81[ASN][1000 genomes]
rs1883216	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs1883402	0.84[ASN][1000 genomes]
rs1883404	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1883405	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1985818	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1987278	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1989298	0.81[ASN][1000 genomes]
rs1989299	0.81[ASN][1000 genomes]
rs2015648	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2049945	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2064219	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2076305	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2092121	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs2092122	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2142705	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs2143059	0.89[ASN][1000 genomes]
rs2143060	0.91[ASN][1000 genomes]
rs2143061	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2143062	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2143063	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2179154	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2179362	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2206250	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2206251	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2206252	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2206253	0.83[ASN][1000 genomes]
rs2206254	0.81[ASN][1000 genomes]
rs2223463	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2223464	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2235252	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs2235254	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs2272814	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs2294308	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap]
rs2294309	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap]
rs2393927	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2393928	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2393929	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2393930	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2393931	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2393932	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2893916	0.83[ASN][1000 genomes]
rs2893917	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs34185469	0.84[ASN][1000 genomes]
rs3734574	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3734575	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4128497	0.80[ASN][1000 genomes]
rs4305708	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4339442	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4358616	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs4455661	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4478400	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4504471	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4516940	0.87[ASN][1000 genomes]
rs4562132	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4579353	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4711147	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711148	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4711150	0.85[ASN][1000 genomes]
rs4711151	0.86[ASN][1000 genomes]
rs4711153	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4713084	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713085	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713086	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713088	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713089	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713090	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713092	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4713093	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4713094	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4713096	0.84[ASN][1000 genomes]
rs4713097	0.86[ASN][1000 genomes]
rs4713105	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4713106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs4713107	0.82[EUR][1000 genomes]
rs57125518	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57647048	0.81[ASN][1000 genomes]
rs62401131	0.84[ASN][1000 genomes]
rs6456774	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456775	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6456776	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6456777	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6456778	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6456779	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6456781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6456784	0.84[ASN][1000 genomes]
rs6456785	0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6456788	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6456790	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs6650992	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6899780	0.81[ASN][1000 genomes]
rs6899950	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap]
rs6901629	0.94[ASN][1000 genomes]
rs6903254	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6904883	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6908086	0.81[ASN][1000 genomes]
rs6908553	0.86[ASN][1000 genomes]
rs6912091	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6913122	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6914542	0.81[ASN][1000 genomes]
rs6914585	0.81[ASN][1000 genomes]
rs6915934	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6920010	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6920362	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6920408	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs6920733	0.87[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs6921071	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6923108	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6923539	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925606	0.85[ASN][1000 genomes]
rs6926142	0.83[ASN][1000 genomes]
rs6928314	0.84[ASN][1000 genomes]
rs6929812	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6934748	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6934933	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6934985	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6935116	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6935118	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6936356	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6936539	0.88[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6936951	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6938943	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs726830	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7509	0.95[JPT][hapmap]
rs760880	0.81[ASN][1000 genomes]
rs764460	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs766092	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7738512	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7741031	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs7744110	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7745380	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7747283	0.85[ASN][1000 genomes]
rs7747444	0.83[ASN][1000 genomes]
rs7748366	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs7750795	0.91[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap]
rs7754086	0.84[ASN][1000 genomes]
rs7754411	0.94[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7754678	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7754724	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7754977	0.91[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7761989	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7764634	0.82[EUR][1000 genomes]
rs7771598	0.84[ASN][1000 genomes]
rs7772160	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap]
rs7774613	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9295735	0.86[EUR][1000 genomes]
rs9348765	0.82[JPT][hapmap]
rs9357035	0.86[ASN][1000 genomes]
rs9357037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9368503	0.81[JPT][hapmap]
rs9368504	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9368505	0.87[ASN][1000 genomes]
rs9368508	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9461375	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9461378	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461379	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461380	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9468079	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9468100	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468101	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468111	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9468112	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468114	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468115	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9468117	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9468121	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9468141	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap]
rs979352	0.81[ASN][1000 genomes]
rs979353	0.81[ASN][1000 genomes]
rs980960	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs980961	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs980962	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs980963	0.91[CEU][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs7759001	ZNF391	cis	lung	GTEx
rs7759001	GMNN	cis	cerebellum	SCAN
rs7759001	ZNF391	cis	Adipose Subcutaneous	GTEx
rs7759001	ZNF391	cis	Muscle Skeletal	GTEx
rs7759001	ZNF391	cis	cerebellum	SCAN
rs7759001	HIST1H2AB	cis	parietal	SCAN
rs7759001	ZNF391	Cis_1M	lymphoblastoid	RTeQTL
rs7759001	ZNF391	cis	Artery Tibial	GTEx
rs7759001	ZNF391	cis	Artery Aorta	GTEx
rs7759001	HIST1H4G	cis	cerebellum	SCAN
rs7759001	ZNF391	cis	Nerve Tibial	GTEx
rs7759001	ZNF391	cis	Skin Sun Exposed Lower leg	GTEx
rs7759001	ZNF391	cis	Heart Left Ventricle	GTEx
rs7759001	ZNF391	cis	parietal	SCAN
rs7759001	ZNF391	cis	Esophagus Mucosa	GTEx
rs7759001	ZNF391	cis	Thyroid	GTEx
rs7759001	ZNF391	cis	Esophagus Muscularis	GTEx
rs7759001	ZSCAN23	cis	cerebellum	SCAN

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27326800-27342000	Weak transcription	Colonic Mucosa	Colon
2	chr6:27327000-27342000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:27327400-27341800	Weak transcription	Fetal Brain Male	brain
4	chr6:27327400-27341800	Weak transcription	Fetal Kidney	kidney
5	chr6:27327600-27342200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:27328000-27342400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:27328200-27341800	Weak transcription	Adipose Nuclei	Adipose
8	chr6:27328200-27341800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:27328200-27341800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:27328200-27342200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:27328400-27341800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:27329400-27341800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:27329800-27342000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:27330600-27341800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:27330600-27341800	Weak transcription	Brain Anterior Caudate	brain
16	chr6:27331200-27341600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:27331200-27341800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:27331600-27342000	Weak transcription	Left Ventricle	heart
19	chr6:27334000-27342200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:27336200-27341800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:27336200-27342000	Weak transcription	Gastric	stomach
22	chr6:27336400-27342000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:27336400-27342000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:27336400-27342000	Weak transcription	Right Atrium	heart
25	chr6:27336600-27341600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:27336600-27341600	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:27336600-27342000	Weak transcription	Pancreas	Pancrea
28	chr6:27336800-27341800	Weak transcription	Brain Angular Gyrus	brain
29	chr6:27336800-27341800	Weak transcription	Fetal Brain Female	brain
30	chr6:27336800-27341800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:27336800-27341800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:27336800-27342000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:27336800-27342000	Weak transcription	Fetal Intestine Large	intestine
34	chr6:27336800-27342000	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:27336800-27342000	Weak transcription	Right Ventricle	heart
36	chr6:27337000-27341800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:27337000-27341800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:27337000-27342000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:27337000-27342000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:27337000-27342000	Weak transcription	Aorta	Aorta
41	chr6:27337000-27342000	Weak transcription	Fetal Intestine Small	intestine
42	chr6:27337000-27342000	Weak transcription	Fetal Lung	lung
43	chr6:27337000-27342000	Weak transcription	Fetal Stomach	stomach
44	chr6:27337000-27342000	Weak transcription	Ovary	ovary
45	chr6:27337000-27342000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:27337000-27342200	Weak transcription	Esophagus	oesophagus
47	chr6:27337200-27342000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:27337400-27342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:27337800-27342000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:27338400-27341600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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