Variant report

Variant	rs10979211
Chromosome Location	chr9:110871021-110871022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110864197..110866259-chr9:110869117..110871083,2	MCF-7	breast:
2	chr9:110250152..110252834-chr9:110867588..110871290,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10118814	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10120623	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10283867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10816630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10816631	0.83[EUR][1000 genomes]
rs10979213	0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10979214	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353211	0.83[EUR][1000 genomes]
rs1434849	0.83[EUR][1000 genomes]
rs1999454	0.82[EUR][1000 genomes]
rs2043486	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7042864	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7045748	0.83[EUR][1000 genomes]
rs7046495	0.83[EUR][1000 genomes]
rs7046752	0.83[EUR][1000 genomes]
rs7856975	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7861470	0.93[YRI][hapmap]
rs7861571	0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7873138	0.83[EUR][1000 genomes]
rs7874033	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7874300	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7874302	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10979211	FKTN	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110863200-110881600	Weak transcription	Gastric	stomach
2	chr9:110866400-110871200	Weak transcription	Fetal Stomach	stomach
3	chr9:110867400-110880200	Weak transcription	Esophagus	oesophagus
4	chr9:110867600-110881600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:110868600-110899800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:110870400-110871600	Flanking Active TSS	K562	blood
7	chr9:110870600-110871200	Enhancers	A549	lung
8	chr9:110870600-110871600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:110870600-110871600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:110870600-110871600	Enhancers	Stomach Mucosa	stomach
11	chr9:110870600-110872600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:110870600-110873000	Enhancers	NHDF-Ad	bronchial
13	chr9:110870800-110871200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:110870800-110871400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:110870800-110871600	Enhancers	Osteobl	bone
16	chr9:110870800-110871800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:110870800-110872200	Enhancers	HepG2	liver
18	chr9:110871000-110871400	Enhancers	Fetal Intestine Large	intestine
19	chr9:110871000-110872800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links