Variant report

Variant	rs10283867
Chromosome Location	chr9:110868090-110868091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:128545333..128546845-chr9:110865560..110868479,2	MCF-7	breast:
2	chr9:110250152..110252834-chr9:110867588..110871290,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10118814	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10120623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816631	0.83[EUR][1000 genomes]
rs10979211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979213	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10979214	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979218	0.80[EUR][1000 genomes]
rs12353211	0.83[EUR][1000 genomes]
rs1434849	0.83[EUR][1000 genomes]
rs1999454	0.82[EUR][1000 genomes]
rs2043486	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7042864	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7045748	0.83[EUR][1000 genomes]
rs7046495	0.83[EUR][1000 genomes]
rs7046752	0.83[EUR][1000 genomes]
rs7856975	0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7861571	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7873138	0.83[EUR][1000 genomes]
rs7874033	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7874300	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7874302	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110858000-110870600	Weak transcription	A549	lung
2	chr9:110863200-110881600	Weak transcription	Gastric	stomach
3	chr9:110865200-110868200	Weak transcription	K562	blood
4	chr9:110865400-110868200	Weak transcription	Ovary	ovary
5	chr9:110865600-110868200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:110865800-110868200	Enhancers	NHEK	skin
7	chr9:110866000-110868400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:110866000-110870600	Weak transcription	NHDF-Ad	bronchial
9	chr9:110866200-110870800	Weak transcription	Osteobl	bone
10	chr9:110866400-110868600	Enhancers	Stomach Mucosa	stomach
11	chr9:110866400-110870600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:110866400-110871200	Weak transcription	Fetal Stomach	stomach
13	chr9:110866600-110868400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:110866800-110868400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr9:110867000-110868200	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:110867200-110868400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:110867400-110880200	Weak transcription	Esophagus	oesophagus
18	chr9:110867600-110868600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:110867600-110881600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:110867800-110868600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:110867800-110868600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr9:110868000-110868400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr9:110868000-110868600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr9:110868000-110868600	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links