Variant report

Variant	rs10816630
Chromosome Location	chr9:110868381-110868382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:128545333..128546845-chr9:110865560..110868479,2	MCF-7	breast:
2	chr9:110250152..110252834-chr9:110867588..110871290,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10118814	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10120623	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816631	0.83[EUR][1000 genomes]
rs10979211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979213	0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10979214	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979218	0.80[EUR][1000 genomes]
rs12353211	0.83[EUR][1000 genomes]
rs1434849	0.83[EUR][1000 genomes]
rs1999454	0.82[EUR][1000 genomes]
rs2043486	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7042864	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045748	0.83[EUR][1000 genomes]
rs7046495	0.83[EUR][1000 genomes]
rs7046752	0.83[EUR][1000 genomes]
rs7856975	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7861470	0.88[YRI][hapmap]
rs7861571	0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7873138	0.83[EUR][1000 genomes]
rs7874033	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7874300	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7874302	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110858000-110870600	Weak transcription	A549	lung
2	chr9:110863200-110881600	Weak transcription	Gastric	stomach
3	chr9:110866000-110868400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:110866000-110870600	Weak transcription	NHDF-Ad	bronchial
5	chr9:110866200-110870800	Weak transcription	Osteobl	bone
6	chr9:110866400-110868600	Enhancers	Stomach Mucosa	stomach
7	chr9:110866400-110870600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:110866400-110871200	Weak transcription	Fetal Stomach	stomach
9	chr9:110866600-110868400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:110866800-110868400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr9:110867200-110868400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr9:110867400-110880200	Weak transcription	Esophagus	oesophagus
13	chr9:110867600-110868600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:110867600-110881600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:110867800-110868600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:110867800-110868600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr9:110868000-110868400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:110868000-110868600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:110868000-110868600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr9:110868200-110868400	Enhancers	Fetal Muscle Leg	muscle
21	chr9:110868200-110868800	Enhancers	K562	blood
22	chr9:110868200-110870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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