Variant report

Variant	rs7861571
Chromosome Location	chr9:110870097-110870098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110864197..110866259-chr9:110869117..110871083,2	MCF-7	breast:
2	chr9:110250152..110252834-chr9:110867588..110871290,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10118814	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10120623	0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10283867	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10816630	0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10816631	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10979211	0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10979213	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979214	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10979218	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10979226	1.00[JPT][hapmap]
rs10979227	1.00[JPT][hapmap]
rs10979239	1.00[JPT][hapmap]
rs10979242	1.00[JPT][hapmap]
rs10979243	1.00[JPT][hapmap]
rs10979244	1.00[JPT][hapmap]
rs10979245	1.00[JPT][hapmap]
rs12353211	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12379956	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12379962	1.00[JPT][hapmap]
rs12708283	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1434840	1.00[JPT][hapmap]
rs1434841	1.00[JPT][hapmap]
rs1434842	1.00[JPT][hapmap]
rs1434849	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1836459	1.00[JPT][hapmap]
rs1999454	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2043486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2053148	1.00[JPT][hapmap]
rs2117466	1.00[JPT][hapmap]
rs7020611	1.00[JPT][hapmap]
rs7033853	1.00[JPT][hapmap]
rs7042864	0.84[EUR][1000 genomes]
rs7045748	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7046495	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7046752	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7047840	1.00[JPT][hapmap]
rs7048206	1.00[JPT][hapmap]
rs7856975	0.83[EUR][1000 genomes]
rs7861470	1.00[YRI][hapmap]
rs7873138	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7874033	0.84[EUR][1000 genomes]
rs7874300	0.84[EUR][1000 genomes]
rs7874302	0.84[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110858000-110870600	Weak transcription	A549	lung
2	chr9:110863200-110881600	Weak transcription	Gastric	stomach
3	chr9:110866000-110870600	Weak transcription	NHDF-Ad	bronchial
4	chr9:110866200-110870800	Weak transcription	Osteobl	bone
5	chr9:110866400-110870600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:110866400-110871200	Weak transcription	Fetal Stomach	stomach
7	chr9:110867400-110880200	Weak transcription	Esophagus	oesophagus
8	chr9:110867600-110881600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:110868200-110870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:110868400-110870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:110868600-110870600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:110868600-110870600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:110868600-110870600	Weak transcription	Stomach Mucosa	stomach
14	chr9:110868600-110870800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:110868600-110899800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:110868800-110871000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:110869800-110870400	Enhancers	K562	blood

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