Variant report

Variant	rs7042864
Chromosome Location	chr9:110872307-110872308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110871096..110873067-chr9:110873240..110875254,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10118814	0.83[EUR][1000 genomes]
rs10120623	0.96[CEU][hapmap];0.89[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10283867	0.89[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10816630	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10816631	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10979211	0.93[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10979213	0.84[EUR][1000 genomes]
rs10979214	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10979218	0.80[EUR][1000 genomes]
rs12353211	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1434849	0.83[EUR][1000 genomes]
rs1999454	0.82[EUR][1000 genomes]
rs2043486	0.84[EUR][1000 genomes]
rs7045748	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7046495	0.83[EUR][1000 genomes]
rs7046752	0.83[EUR][1000 genomes]
rs7856975	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7861571	0.84[EUR][1000 genomes]
rs7873138	0.83[EUR][1000 genomes]
rs7874033	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7874300	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7874302	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Tonometry	17903302	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7042864	FKTN	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110863200-110881600	Weak transcription	Gastric	stomach
2	chr9:110867400-110880200	Weak transcription	Esophagus	oesophagus
3	chr9:110867600-110881600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:110868600-110899800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:110870600-110872600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:110870600-110873000	Enhancers	NHDF-Ad	bronchial
7	chr9:110871000-110872800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:110871600-110872400	Weak transcription	Stomach Mucosa	stomach
9	chr9:110871600-110873000	Enhancers	K562	blood
10	chr9:110871600-110875400	Weak transcription	Osteobl	bone
11	chr9:110871800-110876000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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