Variant report

Variant	rs10120623
Chromosome Location	chr9:110868532-110868533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110250152..110252834-chr9:110867588..110871290,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10118814	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10283867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816630	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816631	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10979211	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979213	0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10979214	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979218	0.80[EUR][1000 genomes]
rs12353211	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1434849	0.83[EUR][1000 genomes]
rs1999454	0.82[EUR][1000 genomes]
rs2043486	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7042864	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045748	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7046495	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7046752	0.83[EUR][1000 genomes]
rs7856975	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7861470	0.92[YRI][hapmap]
rs7861571	0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7873138	0.83[EUR][1000 genomes]
rs7874033	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7874300	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7874302	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110858000-110870600	Weak transcription	A549	lung
2	chr9:110863200-110881600	Weak transcription	Gastric	stomach
3	chr9:110866000-110870600	Weak transcription	NHDF-Ad	bronchial
4	chr9:110866200-110870800	Weak transcription	Osteobl	bone
5	chr9:110866400-110868600	Enhancers	Stomach Mucosa	stomach
6	chr9:110866400-110870600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:110866400-110871200	Weak transcription	Fetal Stomach	stomach
8	chr9:110867400-110880200	Weak transcription	Esophagus	oesophagus
9	chr9:110867600-110868600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:110867600-110881600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:110867800-110868600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:110867800-110868600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:110868000-110868600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:110868000-110868600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:110868200-110868800	Enhancers	K562	blood
16	chr9:110868200-110870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:110868400-110868600	Enhancers	Ovary	ovary
18	chr9:110868400-110868800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:110868400-110870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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