Variant report

Variant	rs10992914
Chromosome Location	chr9:96593062-96593063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10992916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10992927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10992928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17536318	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1987046	1.00[AFR][1000 genomes]
rs2265563	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2265564	0.86[ASN][1000 genomes]
rs2265565	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2265571	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2265799	1.00[AFR][1000 genomes]
rs2265805	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2487010	1.00[AFR][1000 genomes]
rs2487016	0.86[ASN][1000 genomes]
rs2487017	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2487022	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2490996	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2490999	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2491000	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3996258	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3996259	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4308795	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4636266	0.91[ASN][1000 genomes]
rs62574261	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62574262	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62575578	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62575579	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62575608	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62575609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62575610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62575611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9409687	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9409695	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1824724	chr9:96582360-96598551	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96590200-96593200	Enhancers	Fetal Lung	lung
2	chr9:96590600-96594800	Weak transcription	Spleen	Spleen
3	chr9:96591400-96593200	Enhancers	Ovary	ovary
4	chr9:96591600-96593600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:96592200-96594600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96592400-96593400	Enhancers	Gastric	stomach
7	chr9:96592600-96593400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr9:96593000-96593200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:96593000-96593400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:96593000-96593400	Enhancers	Stomach Smooth Muscle	stomach

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