Variant report

Variant	rs3996259
Chromosome Location	chr9:96572669-96572670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96568006..96570700-chr9:96571865..96574330,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10992914	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10992916	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10992925	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10992926	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10992927	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10992928	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10992929	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10992930	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1987046	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2265563	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2265564	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2265565	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2265571	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2265799	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2265805	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2487010	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2487016	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2487017	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2487022	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2490996	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2490999	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2491000	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3996258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4308795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4636266	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62574261	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62575578	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62575579	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62575608	0.97[ASN][1000 genomes]
rs62575609	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62575610	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62575611	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7027806	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9409687	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9409695	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96571400-96576000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:96571600-96574200	Enhancers	K562	blood
3	chr9:96572000-96572800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96572000-96573200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:96572000-96574200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:96572000-96574200	Bivalent Enhancer	Fetal Stomach	stomach
7	chr9:96572200-96572800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:96572200-96573000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr9:96572200-96573200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr9:96572200-96573800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr9:96572200-96574400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:96572400-96572800	Enhancers	Stomach Smooth Muscle	stomach
13	chr9:96572400-96573200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr9:96572400-96573400	Enhancers	Fetal Lung	lung
15	chr9:96572400-96573600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:96572600-96572800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
17	chr9:96572600-96572800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:96572600-96572800	Bivalent Enhancer	Fetal Intestine Small	intestine
19	chr9:96572600-96572800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
20	chr9:96572600-96573000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
21	chr9:96572600-96573200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:96572600-96576400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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