Variant report

Variant	rs62575578
Chromosome Location	chr9:96576740-96576741
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:96576423-96577036	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr9:96576369-96576934	H1-neurons	neurons:	n/a	n/a
3	REST	chr9:96576208-96577295	H1-neurons	neurons:	n/a	chr9:96577015-96577035 chr9:96577114-96577132 chr9:96577117-96577130 chr9:96576306-96576326 chr9:96577018-96577031 chr9:96576518-96576531 chr9:96576657-96576670
4	FOXA2	chr9:96576415-96576762	A549	lung:	n/a	n/a
5	SIN3A	chr9:96576549-96576920	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTBP2	chr9:96576492-96577132	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:96573213..96577608-chr9:96586073..96591162,5	K562	blood:
2	chr9:96576722..96579427-chr9:96585634..96588244,2	MCF-7	breast:
3	chr9:96576702..96577356-chr9:96724518..96725590,3	MCF-7	breast:

Variant related genes	Relation type
MIR4291	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10992914	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992916	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992925	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992928	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992929	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992930	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17536318	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1987046	1.00[AFR][1000 genomes]
rs2265563	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2265564	0.88[ASN][1000 genomes]
rs2265565	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2265571	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2265799	1.00[AFR][1000 genomes]
rs2265805	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2487010	1.00[AFR][1000 genomes]
rs2487016	0.88[ASN][1000 genomes]
rs2487017	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2487022	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2490996	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2490999	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2491000	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3996258	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3996259	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4308795	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4636266	0.92[ASN][1000 genomes]
rs62574261	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62574262	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62575579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575609	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575610	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575611	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027806	0.81[ASN][1000 genomes]
rs9409687	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9409695	1.00[AFR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96573400-96576800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:96575600-96577200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:96575800-96577800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:96576000-96576800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:96576000-96577200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr9:96576000-96577600	Bivalent Enhancer	Fetal Stomach	stomach
7	chr9:96576000-96578000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:96576200-96577600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr9:96576400-96577000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:96576400-96577000	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr9:96576400-96577200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:96576400-96578000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:96576600-96577000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:96576600-96577000	Enhancers	Brain Germinal Matrix	brain
15	chr9:96576600-96577200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:96576600-96577400	Enhancers	HUES64 Cell Line	embryonic stem cell

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