Variant report

Variant	rs3996258
Chromosome Location	chr9:96571759-96571760
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10992914	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10992916	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10992925	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10992928	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10992929	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10992930	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1987046	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265563	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2265564	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2265565	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2265571	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2265799	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265805	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2487010	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2487016	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2487017	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2487022	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2490996	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2490999	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2491000	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3996259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4308795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4636266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62574261	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62575578	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62575579	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62575608	0.97[ASN][1000 genomes]
rs62575609	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62575610	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62575611	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7027806	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9409687	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9409695	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96570000-96572400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:96570200-96572000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:96571000-96572000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96571400-96576000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:96571600-96574200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links