Variant report

Variant	rs62574261
Chromosome Location	chr9:96614872-96614873
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96614267..96616189-chr9:96618458..96620926,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231990	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10992914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992916	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992925	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992928	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992929	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992930	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17536318	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1987046	0.86[AFR][1000 genomes]
rs2265563	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2265564	0.85[ASN][1000 genomes]
rs2265565	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2265571	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2265799	0.86[AFR][1000 genomes]
rs2265805	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2487010	0.86[AFR][1000 genomes]
rs2487016	0.85[ASN][1000 genomes]
rs2487017	0.85[ASN][1000 genomes]
rs2487022	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2490996	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2490999	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2491000	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3996258	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3996259	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4308795	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4636266	0.89[ASN][1000 genomes]
rs62574262	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62575578	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62575579	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62575608	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62575609	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62575610	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62575611	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9409687	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9409695	0.86[AFR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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