Variant report

Variant	rs2487010
Chromosome Location	chr9:96540385-96540386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10992914	1.00[AFR][1000 genomes]
rs10992916	1.00[AFR][1000 genomes]
rs10992925	1.00[AFR][1000 genomes]
rs10992927	1.00[ASW][hapmap];0.87[GIH][hapmap];0.94[MKK][hapmap]
rs10992928	1.00[AFR][1000 genomes]
rs10992929	1.00[AFR][1000 genomes]
rs10992930	1.00[AFR][1000 genomes]
rs12376257	0.88[MKK][hapmap]
rs1987046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2265564	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2265565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2265571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2265799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2487016	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2487017	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2487022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2490996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2490999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2491000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3996258	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3996259	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4308795	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4636266	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62574261	0.86[AFR][1000 genomes]
rs62575578	1.00[AFR][1000 genomes]
rs62575579	1.00[AFR][1000 genomes]
rs62575609	1.00[AFR][1000 genomes]
rs62575610	1.00[AFR][1000 genomes]
rs62575611	1.00[AFR][1000 genomes]
rs7027806	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9409687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9409695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2487010	FGD3	cis	parietal	SCAN
rs2487010	CHST15	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96540200-96540400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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