Variant report

Variant	rs62575611
Chromosome Location	chr9:96589992-96589993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96578082..96580794-chr9:96589980..96592081,2	K562	blood:
2	chr9:96589596..96590325-chr9:96671569..96672287,2	MCF-7	breast:
3	chr9:96573213..96577608-chr9:96586073..96591162,5	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10992914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17536318	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1987046	1.00[AFR][1000 genomes]
rs2265563	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2265564	0.88[ASN][1000 genomes]
rs2265565	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2265571	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2265799	1.00[AFR][1000 genomes]
rs2265805	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2487010	1.00[AFR][1000 genomes]
rs2487016	0.88[ASN][1000 genomes]
rs2487017	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2487022	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2490996	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2490999	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2491000	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3996258	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3996259	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4308795	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4636266	0.92[ASN][1000 genomes]
rs62574261	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62574262	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62575578	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575579	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575608	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027806	0.81[ASN][1000 genomes]
rs9409687	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9409695	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1824724	chr9:96582360-96598551	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96588400-96590200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr9:96588400-96590200	Bivalent Enhancer	Placenta	Placenta
3	chr9:96588600-96590200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr9:96588600-96590600	Bivalent Enhancer	Spleen	Spleen
5	chr9:96588800-96590000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
6	chr9:96588800-96590000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
7	chr9:96588800-96590200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr9:96588800-96590200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr9:96588800-96590200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
10	chr9:96589000-96590000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:96589000-96590000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:96589000-96590000	Bivalent Enhancer	Fetal Stomach	stomach
13	chr9:96589000-96590200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr9:96589000-96590200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chr9:96589000-96590200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
16	chr9:96589000-96590200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr9:96589000-96590200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
18	chr9:96589000-96590200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
19	chr9:96589200-96591000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
20	chr9:96589400-96590000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:96589400-96590000	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr9:96589400-96590200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr9:96589400-96590200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:96589600-96590000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:96589600-96590000	Bivalent Enhancer	Liver	Liver
26	chr9:96589600-96590000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
27	chr9:96589600-96590000	Bivalent Enhancer	Fetal Intestine Small	intestine
28	chr9:96589600-96590000	Enhancers	Gastric	stomach
29	chr9:96589600-96590200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
30	chr9:96589600-96590200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:96589600-96590200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
32	chr9:96589600-96590200	Bivalent Enhancer	Colonic Mucosa	Colon
33	chr9:96589600-96590200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
34	chr9:96589600-96590200	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr9:96589600-96590200	Active TSS	NH-A	brain
36	chr9:96589600-96590600	Enhancers	Brain Substantia Nigra	brain
37	chr9:96589600-96590600	Bivalent/Poised TSS	HepG2	liver
38	chr9:96589600-96590800	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr9:96589800-96590000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:96589800-96590000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:96589800-96590000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
42	chr9:96589800-96590000	Enhancers	Ovary	ovary
43	chr9:96589800-96590000	Weak transcription	Right Atrium	heart
44	chr9:96589800-96590000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
45	chr9:96589800-96590200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:96589800-96590200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:96589800-96590200	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr9:96589800-96590200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:96589800-96590200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:96589800-96590200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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