Variant report

Variant	rs11071519
Chromosome Location	chr15:60620661-60620662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60619466..60621310-chr15:60811404..60814280,2	K562	blood:

Variant related genes	Relation type
ENSG00000245534	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1033027	0.91[ASN][1000 genomes]
rs10851676	0.97[ASN][1000 genomes]
rs10851678	0.83[ASN][1000 genomes]
rs10851679	0.85[ASN][1000 genomes]
rs11071521	0.91[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap]
rs11631793	0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs11631850	0.81[ASN][1000 genomes]
rs11634259	0.81[ASN][1000 genomes]
rs11854079	0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12439973	0.91[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs12441980	0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs12708462	0.94[ASN][1000 genomes]
rs12898604	0.91[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs12899562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12904910	0.91[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1551349	0.97[ASN][1000 genomes]
rs1567408	0.90[ASN][1000 genomes]
rs1967370	0.81[ASN][1000 genomes]
rs2014953	0.91[ASN][1000 genomes]
rs2063322	0.91[ASN][1000 genomes]
rs2063324	0.91[ASN][1000 genomes]
rs2063325	0.91[ASN][1000 genomes]
rs2085037	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2123828	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2136553	0.94[ASN][1000 genomes]
rs2136555	0.94[ASN][1000 genomes]
rs2168013	0.91[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2175187	0.93[ASN][1000 genomes]
rs2202920	0.91[ASN][1000 genomes]
rs2414667	0.96[ASN][1000 genomes]
rs2414668	1.00[ASN][1000 genomes]
rs2414670	1.00[ASN][1000 genomes]
rs3743269	0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3743270	0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3825957	0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4485290	0.99[ASN][1000 genomes]
rs4530072	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4775257	0.90[ASN][1000 genomes]
rs6494191	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7165592	0.96[ASN][1000 genomes]
rs7167571	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7170178	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7170421	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7172784	1.00[ASN][1000 genomes]
rs7176280	0.87[ASN][1000 genomes]
rs7178033	1.00[ASN][1000 genomes]
rs7179548	0.97[ASN][1000 genomes]
rs7180174	0.91[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs8027359	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8029375	0.91[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs8033896	0.94[ASN][1000 genomes]
rs8037326	0.91[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap]
rs8039867	0.94[ASN][1000 genomes]
rs9920432	0.94[ASN][1000 genomes]
rs9920513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920684	0.99[ASN][1000 genomes]
rs9920735	0.94[ASN][1000 genomes]
rs9920883	0.90[ASN][1000 genomes]
rs9972449	0.91[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11071519	TEX9	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60619600-60621200	Weak transcription	HMEC	breast
2	chr15:60619800-60621600	Weak transcription	Hela-S3	cervix
3	chr15:60620600-60621800	Enhancers	A549	lung

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