Variant report

Variant	rs10851679
Chromosome Location	chr15:60640854-60640855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1033027	0.82[EUR][1000 genomes]
rs10851676	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10851678	0.83[ASN][1000 genomes]
rs11071519	0.85[ASN][1000 genomes]
rs11631793	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11631850	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11634259	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11854079	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12439973	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12440492	0.86[ASN][1000 genomes]
rs12441980	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12708462	0.84[ASN][1000 genomes]
rs12898604	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12899562	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12904910	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1551349	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1567408	0.82[EUR][1000 genomes]
rs1967370	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2014953	0.82[EUR][1000 genomes]
rs2063322	0.82[EUR][1000 genomes]
rs2063324	0.82[EUR][1000 genomes]
rs2063325	0.81[EUR][1000 genomes]
rs2085037	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2123828	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2123833	0.81[EUR][1000 genomes]
rs2136553	0.82[EUR][1000 genomes]
rs2136555	0.82[EUR][1000 genomes]
rs2168013	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2175187	0.82[EUR][1000 genomes]
rs2202920	0.82[EUR][1000 genomes]
rs2414667	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2414668	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2414670	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3743269	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3743270	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3825957	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4485290	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4530072	0.87[ASN][1000 genomes]
rs4775257	0.81[EUR][1000 genomes]
rs7165592	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7167571	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7170178	0.87[ASN][1000 genomes]
rs7170421	0.87[ASN][1000 genomes]
rs7172784	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7178033	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7179548	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7180174	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8027359	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8029375	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8033896	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8037326	0.88[ASN][1000 genomes]
rs8039867	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9920432	0.84[ASN][1000 genomes]
rs9920513	0.85[ASN][1000 genomes]
rs9920684	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9920735	0.84[ASN][1000 genomes]
rs9920883	0.82[EUR][1000 genomes]
rs9972449	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60633000-60651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:60634600-60651200	Genic enhancers	A549	lung
3	chr15:60635600-60650000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:60635800-60641600	Strong transcription	Muscle Satellite Cultured Cells	--
5	chr15:60636000-60642600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:60636000-60642600	Strong transcription	Osteobl	bone
7	chr15:60636000-60642800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:60636000-60651800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:60636200-60642400	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:60636200-60642800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:60636200-60643600	Strong transcription	HSMM	muscle
12	chr15:60636200-60646000	Weak transcription	Brain Substantia Nigra	brain
13	chr15:60636200-60646400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:60636400-60642600	Strong transcription	Placenta Amnion	Placenta Amnion
15	chr15:60636400-60644200	Strong transcription	NH-A	brain
16	chr15:60636400-60648600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:60636600-60642400	Strong transcription	HSMMtube	muscle
18	chr15:60636600-60657800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:60636800-60642400	Weak transcription	Fetal Brain Male	brain
20	chr15:60637000-60641600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr15:60637000-60642400	Strong transcription	NHDF-Ad	bronchial
22	chr15:60637000-60643000	Strong transcription	NHLF	lung
23	chr15:60637000-60648200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:60637000-60654800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:60637200-60641600	Strong transcription	Gastric	stomach
26	chr15:60637200-60641600	Strong transcription	Left Ventricle	heart
27	chr15:60637200-60641600	Strong transcription	Right Ventricle	heart
28	chr15:60637200-60642400	Strong transcription	Fetal Muscle Leg	muscle
29	chr15:60637200-60642600	Strong transcription	Adipose Nuclei	Adipose
30	chr15:60637200-60642600	Strong transcription	Duodenum Mucosa	Duodenum
31	chr15:60637200-60642600	Strong transcription	HUVEC	blood vessel
32	chr15:60637200-60649600	Strong transcription	Esophagus	oesophagus
33	chr15:60637200-60649800	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr15:60637200-60652800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:60637200-60653600	Strong transcription	Placenta	Placenta
36	chr15:60637200-60654000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr15:60637200-60656800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:60637200-60656800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:60637400-60643400	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:60637400-60645600	Strong transcription	HMEC	breast
41	chr15:60637400-60649600	Strong transcription	Colonic Mucosa	Colon
42	chr15:60637400-60658000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr15:60637600-60641200	Strong transcription	Liver	Liver
44	chr15:60637600-60641600	Strong transcription	Spleen	Spleen
45	chr15:60637600-60642600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:60637600-60645600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr15:60637600-60647200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:60637600-60650200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:60637600-60651400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:60637600-60658000	Strong transcription	Primary monocytes fromperipheralblood	blood

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