Variant report

Variant	rs7170178
Chromosome Location	chr15:60633854-60633855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:60630021..60635079-chr15:60635150..60637912,4	K562	blood:
2	chr15:60632289..60634096-chr15:60811401..60812974,2	MCF-7	breast:
3	chr15:60631638..60634015-chr15:60636412..60639111,3	K562	blood:

Variant related genes	Relation type
ENSG00000245534	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1033027	0.87[ASN][1000 genomes]
rs10851676	0.99[ASN][1000 genomes]
rs10851678	0.87[ASN][1000 genomes]
rs10851679	0.87[ASN][1000 genomes]
rs11071519	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11071521	0.91[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap]
rs11631793	0.85[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11631850	0.84[ASN][1000 genomes]
rs11634259	0.84[ASN][1000 genomes]
rs11854079	0.91[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12439973	0.91[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs12440492	0.83[ASN][1000 genomes]
rs12441980	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12708462	0.90[ASN][1000 genomes]
rs12898604	0.91[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12899562	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12904910	0.91[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1551349	0.99[ASN][1000 genomes]
rs1567408	0.86[ASN][1000 genomes]
rs1967370	0.85[ASN][1000 genomes]
rs2014953	0.87[ASN][1000 genomes]
rs2063322	0.87[ASN][1000 genomes]
rs2063324	0.87[ASN][1000 genomes]
rs2063325	0.87[ASN][1000 genomes]
rs2085037	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2123828	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2136553	0.90[ASN][1000 genomes]
rs2136555	0.90[ASN][1000 genomes]
rs2168013	0.91[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2175187	0.89[ASN][1000 genomes]
rs2202920	0.87[ASN][1000 genomes]
rs2414667	0.92[ASN][1000 genomes]
rs2414668	0.96[ASN][1000 genomes]
rs2414670	0.96[ASN][1000 genomes]
rs3743269	0.91[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs3743270	0.91[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs3825957	0.91[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4485290	0.95[ASN][1000 genomes]
rs4530072	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775257	0.86[ASN][1000 genomes]
rs6494191	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7165592	0.92[ASN][1000 genomes]
rs7167571	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7170421	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172784	0.96[ASN][1000 genomes]
rs7176280	0.83[ASN][1000 genomes]
rs7178033	0.96[ASN][1000 genomes]
rs7179548	0.99[ASN][1000 genomes]
rs7180174	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs8027359	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8029375	0.91[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs8033896	0.99[ASN][1000 genomes]
rs8037326	0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs8039867	0.99[ASN][1000 genomes]
rs9920432	0.90[ASN][1000 genomes]
rs9920513	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9920684	0.94[ASN][1000 genomes]
rs9920735	0.90[ASN][1000 genomes]
rs9920883	0.86[ASN][1000 genomes]
rs9972449	0.91[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7170178	TEX9	cis	parietal	SCAN

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60623200-60639400	Weak transcription	Fetal Heart	heart
2	chr15:60626400-60636200	Weak transcription	HSMM	muscle
3	chr15:60627200-60635400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:60627800-60635600	Weak transcription	Fetal Stomach	stomach
5	chr15:60627800-60635800	Weak transcription	NHDF-Ad	bronchial
6	chr15:60627800-60637200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:60628600-60635400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:60628600-60637600	Weak transcription	Liver	Liver
9	chr15:60629400-60636400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:60631000-60635400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:60631200-60637200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:60631200-60637800	Weak transcription	Psoas Muscle	Psoas
13	chr15:60631200-60637800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:60631400-60634800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:60631400-60637200	Weak transcription	Gastric	stomach
16	chr15:60631400-60637200	Weak transcription	Left Ventricle	heart
17	chr15:60632200-60637000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:60632200-60637200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:60632600-60634000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:60632800-60635800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:60632800-60636000	Weak transcription	HSMMtube	muscle
22	chr15:60632800-60638000	Weak transcription	NHEK	skin
23	chr15:60633000-60635800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:60633000-60635800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:60633000-60635800	Weak transcription	Fetal Muscle Leg	muscle
26	chr15:60633000-60638200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:60633000-60638200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:60633000-60651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr15:60633200-60635800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:60633200-60635800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:60633200-60636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:60633200-60636000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:60633200-60636000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:60633200-60636200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr15:60633200-60636400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr15:60633200-60637200	Weak transcription	Adipose Nuclei	Adipose
37	chr15:60633200-60637200	Weak transcription	Placenta	Placenta
38	chr15:60633200-60637800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:60633200-60639600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:60633400-60636400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:60633400-60636400	Weak transcription	NH-A	brain
42	chr15:60633400-60636600	Weak transcription	Fetal Intestine Large	intestine
43	chr15:60633400-60637200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:60633400-60637400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:60633400-60638200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:60633400-60639600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:60633400-60639600	Weak transcription	HepG2	liver
48	chr15:60633600-60634000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr15:60633600-60634400	Weak transcription	A549	lung
50	chr15:60633800-60635200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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