Variant report

Variant	rs11631793
Chromosome Location	chr15:60655348-60655349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:60652919..60657958-chr15:60685663..60689555,8	MCF-7	breast:
2	chr15:60655294..60659413-chr15:60665307..60668216,4	MCF-7	breast:
3	chr15:60654992..60658958-chr15:60661342..60663027,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182718	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1033027	0.89[EUR][1000 genomes]
rs10851676	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10851678	0.81[ASN][1000 genomes]
rs10851679	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11071519	0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs11071521	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs11631850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854079	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439973	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12440492	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12441980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708462	0.84[EUR][1000 genomes]
rs12898604	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12899562	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs12904910	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1551349	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1567408	0.89[EUR][1000 genomes]
rs1967370	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2014953	0.88[EUR][1000 genomes]
rs2063322	0.88[EUR][1000 genomes]
rs2063324	0.88[EUR][1000 genomes]
rs2063325	0.88[EUR][1000 genomes]
rs2085037	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2123828	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2123833	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2136553	0.89[EUR][1000 genomes]
rs2136555	0.88[EUR][1000 genomes]
rs2168013	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2175187	0.89[EUR][1000 genomes]
rs2202920	0.88[EUR][1000 genomes]
rs2414667	0.89[EUR][1000 genomes]
rs2414668	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2414670	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3743269	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3743270	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3825957	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4485290	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4530072	0.83[ASN][1000 genomes]
rs4775257	0.88[EUR][1000 genomes]
rs7165592	0.89[EUR][1000 genomes]
rs7167571	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7170178	0.85[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs7170421	0.84[ASN][1000 genomes]
rs7172784	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7178033	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7179548	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7180174	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027359	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8029375	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033896	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8037326	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8039867	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9920432	0.82[EUR][1000 genomes]
rs9920513	0.81[ASN][1000 genomes]
rs9920684	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920883	0.86[EUR][1000 genomes]
rs9972449	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60636600-60657800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:60637200-60656800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:60637200-60656800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:60637400-60658000	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:60637600-60658000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:60638400-60656800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr15:60639600-60656800	Strong transcription	HepG2	liver
8	chr15:60640000-60657800	Strong transcription	Fetal Intestine Large	intestine
9	chr15:60640600-60656200	Weak transcription	Fetal Thymus	thymus
10	chr15:60640600-60656800	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:60640600-60657200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:60640600-60657800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:60641600-60658000	Genic enhancers	Muscle Satellite Cultured Cells	--
14	chr15:60642400-60657600	Strong transcription	K562	blood
15	chr15:60643600-60655800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:60646200-60656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:60646400-60662200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:60647400-60669000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:60647800-60666400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:60648000-60655800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:60648000-60681000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:60649000-60658000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:60649200-60681000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:60649400-60663400	Weak transcription	Ovary	ovary
25	chr15:60649400-60668600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:60649400-60681000	Weak transcription	Primary T cells from cord blood	blood
27	chr15:60649600-60666600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:60650200-60655400	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:60650200-60658000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:60650600-60656800	Strong transcription	GM12878-XiMat	blood
31	chr15:60650600-60657800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:60650800-60657200	Strong transcription	Fetal Muscle Trunk	muscle
33	chr15:60650800-60658000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:60650800-60658000	Genic enhancers	HSMM	muscle
35	chr15:60651000-60655600	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:60651000-60656600	Strong transcription	Lung	lung
37	chr15:60651000-60657000	Genic enhancers	NHLF	lung
38	chr15:60651000-60657800	Genic enhancers	NH-A	brain
39	chr15:60651000-60657800	Genic enhancers	NHDF-Ad	bronchial
40	chr15:60651000-60658000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:60651200-60656800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:60651200-60658000	Genic enhancers	Hela-S3	cervix
43	chr15:60651200-60658000	Genic enhancers	Osteobl	bone
44	chr15:60651400-60657800	Genic enhancers	HUVEC	blood vessel
45	chr15:60651600-60657000	Strong transcription	Liver	Liver
46	chr15:60651800-60655400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr15:60651800-60656000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:60651800-60656400	Genic enhancers	Rectal Mucosa Donor 31	rectum
49	chr15:60651800-60667600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr15:60652000-60655600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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