Variant report

Variant	rs4530072
Chromosome Location	chr15:60628789-60628790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60628641..60631521-chr15:60635150..60637582,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1033027	0.88[ASN][1000 genomes]
rs10851676	1.00[ASN][1000 genomes]
rs10851678	0.85[ASN][1000 genomes]
rs10851679	0.87[ASN][1000 genomes]
rs11071519	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11071521	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11631793	0.86[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs11631850	0.83[ASN][1000 genomes]
rs11634259	0.83[ASN][1000 genomes]
rs11854079	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs12439973	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs12440492	0.82[ASN][1000 genomes]
rs12441980	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12708462	0.91[ASN][1000 genomes]
rs12898604	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs12899562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12904910	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1551349	1.00[ASN][1000 genomes]
rs1567408	0.88[ASN][1000 genomes]
rs1967370	0.84[ASN][1000 genomes]
rs2014953	0.88[ASN][1000 genomes]
rs2063322	0.88[ASN][1000 genomes]
rs2063324	0.88[ASN][1000 genomes]
rs2063325	0.88[ASN][1000 genomes]
rs2085037	0.92[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2123828	0.92[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs2136553	0.92[ASN][1000 genomes]
rs2136555	0.92[ASN][1000 genomes]
rs2168013	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2175187	0.90[ASN][1000 genomes]
rs2202920	0.88[ASN][1000 genomes]
rs2414667	0.93[ASN][1000 genomes]
rs2414668	0.97[ASN][1000 genomes]
rs2414670	0.97[ASN][1000 genomes]
rs3743269	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs3743270	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs3825957	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs4485290	0.96[ASN][1000 genomes]
rs4775257	0.88[ASN][1000 genomes]
rs6494191	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7165592	0.93[ASN][1000 genomes]
rs7167571	0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs7170178	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170421	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7172784	0.97[ASN][1000 genomes]
rs7176280	0.84[ASN][1000 genomes]
rs7178033	0.97[ASN][1000 genomes]
rs7179548	1.00[ASN][1000 genomes]
rs7180174	0.91[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs8027359	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8029375	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs8033896	0.97[ASN][1000 genomes]
rs8037326	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs8039867	0.97[ASN][1000 genomes]
rs9920432	0.91[ASN][1000 genomes]
rs9920513	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9920684	0.96[ASN][1000 genomes]
rs9920735	0.91[ASN][1000 genomes]
rs9920883	0.87[ASN][1000 genomes]
rs9972449	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20296	chr15:60623455-60632031	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60623200-60639400	Weak transcription	Fetal Heart	heart
2	chr15:60626400-60636200	Weak transcription	HSMM	muscle
3	chr15:60627200-60635400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:60627600-60628800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:60627800-60635600	Weak transcription	Fetal Stomach	stomach
6	chr15:60627800-60635800	Weak transcription	NHDF-Ad	bronchial
7	chr15:60627800-60637200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:60628000-60628800	Enhancers	A549	lung
9	chr15:60628400-60629200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr15:60628600-60632600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:60628600-60632800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:60628600-60635400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:60628600-60637600	Weak transcription	Liver	Liver

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