Variant report

Variant	rs12440492
Chromosome Location	chr15:60657242-60657243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:60656079..60659449-chr15:60682801..60685330,3	MCF-7	breast:
2	chr15:60656394..60658576-chr15:60685102..60687398,2	K562	blood:
3	chr15:60652919..60657958-chr15:60685663..60689555,8	MCF-7	breast:
4	chr15:60655294..60659413-chr15:60665307..60668216,4	MCF-7	breast:
5	chr15:60654992..60658958-chr15:60661342..60663027,3	MCF-7	breast:
6	chr15:60655370..60658330-chr15:60768814..60771405,4	MCF-7	breast:
7	chr15:60642896..60645141-chr15:60656498..60658759,2	K562	blood:

Variant related genes	Relation type
ENSG00000128915	Chromatin interaction
ENSG00000245534	Chromatin interaction
ENSG00000182718	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1033027	0.85[EUR][1000 genomes]
rs10851676	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10851679	0.86[ASN][1000 genomes]
rs11631793	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11631850	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11634259	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11854079	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12439973	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12441980	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12708462	0.81[EUR][1000 genomes]
rs12898604	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12899562	0.85[EUR][1000 genomes]
rs12904910	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1551349	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1567408	0.85[EUR][1000 genomes]
rs1967370	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2014953	0.85[EUR][1000 genomes]
rs2063322	0.85[EUR][1000 genomes]
rs2063324	0.85[EUR][1000 genomes]
rs2063325	0.84[EUR][1000 genomes]
rs2085037	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2123828	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2123833	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2136553	0.85[EUR][1000 genomes]
rs2136555	0.85[EUR][1000 genomes]
rs2168013	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175187	0.85[EUR][1000 genomes]
rs2202920	0.85[EUR][1000 genomes]
rs2414667	0.85[EUR][1000 genomes]
rs2414668	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2414670	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3743269	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3743270	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3825957	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4485290	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4530072	0.82[ASN][1000 genomes]
rs4775257	0.84[EUR][1000 genomes]
rs7165592	0.85[EUR][1000 genomes]
rs7167571	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7170178	0.83[ASN][1000 genomes]
rs7170421	0.83[ASN][1000 genomes]
rs7172784	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7178033	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7179548	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7180174	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8027359	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8029375	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8033896	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8037326	0.86[ASN][1000 genomes]
rs8039867	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9920432	0.82[EUR][1000 genomes]
rs9920684	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9920883	0.83[EUR][1000 genomes]
rs9972449	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60636600-60657800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:60637400-60658000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:60637600-60658000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr15:60640000-60657800	Strong transcription	Fetal Intestine Large	intestine
5	chr15:60640600-60657800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:60641600-60658000	Genic enhancers	Muscle Satellite Cultured Cells	--
7	chr15:60642400-60657600	Strong transcription	K562	blood
8	chr15:60646400-60662200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:60647400-60669000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:60647800-60666400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:60648000-60681000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:60649000-60658000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:60649200-60681000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:60649400-60663400	Weak transcription	Ovary	ovary
15	chr15:60649400-60668600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:60649400-60681000	Weak transcription	Primary T cells from cord blood	blood
17	chr15:60649600-60666600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:60650200-60658000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:60650600-60657800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:60650800-60658000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:60650800-60658000	Genic enhancers	HSMM	muscle
22	chr15:60651000-60657800	Genic enhancers	NH-A	brain
23	chr15:60651000-60657800	Genic enhancers	NHDF-Ad	bronchial
24	chr15:60651000-60658000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:60651200-60658000	Genic enhancers	Hela-S3	cervix
26	chr15:60651200-60658000	Genic enhancers	Osteobl	bone
27	chr15:60651400-60657800	Genic enhancers	HUVEC	blood vessel
28	chr15:60651800-60667600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr15:60652200-60660600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:60652800-60666800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr15:60653600-60658000	Genic enhancers	HSMMtube	muscle
32	chr15:60654000-60657800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:60654600-60657800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:60654600-60657800	Genic enhancers	NHEK	skin
35	chr15:60655400-60657800	Transcr. at gene 5' and 3'	A549	lung
36	chr15:60655600-60657400	Strong transcription	Fetal Intestine Small	intestine
37	chr15:60655800-60657800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:60656000-60663400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:60656000-60668000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:60656400-60657600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:60656400-60657800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:60656400-60658000	Strong transcription	Placenta	Placenta
43	chr15:60656400-60662400	Weak transcription	Small Intestine	intestine
44	chr15:60656600-60657400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:60656600-60658000	Strong transcription	HMEC	breast
46	chr15:60656600-60658600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:60656600-60661200	Weak transcription	Fetal Stomach	stomach
48	chr15:60656600-60661400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:60656600-60661800	Weak transcription	Lung	lung
50	chr15:60656600-60662000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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