Variant report

Variant	rs8033896
Chromosome Location	chr15:60638256-60638257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60636624..60638286-chr15:60651489..60653321,2	K562	blood:
2	chr15:60631638..60634015-chr15:60636412..60639111,3	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1033027	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10851676	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10851678	0.88[ASN][1000 genomes]
rs10851679	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11071519	0.91[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11071521	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap]
rs11631793	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631850	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11634259	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11854079	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12439973	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12440492	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12441980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12708462	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12898604	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12899562	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12904910	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1551349	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1567408	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1967370	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2014953	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2063322	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2063324	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2063325	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2085037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2123828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2123833	0.90[EUR][1000 genomes]
rs2136553	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2136555	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2168013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2175187	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2202920	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2414667	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2414668	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2414670	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3743269	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3743270	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3825957	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4485290	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4530072	0.97[ASN][1000 genomes]
rs4775257	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6494191	0.84[ASN][1000 genomes]
rs7165592	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7167571	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7170178	0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs7170421	0.99[ASN][1000 genomes]
rs7172784	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7176280	0.82[ASN][1000 genomes]
rs7178033	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7179548	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7180174	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8027359	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8029375	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8037326	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8039867	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920432	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9920513	0.94[ASN][1000 genomes]
rs9920684	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9920735	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9920883	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9972449	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8033896	C2CD4A	cis	cerebellum	SCAN

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60623200-60639400	Weak transcription	Fetal Heart	heart
2	chr15:60633000-60651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:60633200-60639600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:60633400-60639600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:60633400-60639600	Weak transcription	HepG2	liver
6	chr15:60634000-60638800	Weak transcription	Fetal Kidney	kidney
7	chr15:60634400-60638400	Weak transcription	Stomach Mucosa	stomach
8	chr15:60634600-60651200	Genic enhancers	A549	lung
9	chr15:60634800-60638400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:60635200-60638800	Weak transcription	K562	blood
11	chr15:60635600-60650000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:60635800-60639600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:60635800-60641600	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr15:60636000-60642600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:60636000-60642600	Strong transcription	Osteobl	bone
16	chr15:60636000-60642800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:60636000-60651800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:60636200-60638400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:60636200-60642400	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:60636200-60642800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:60636200-60643600	Strong transcription	HSMM	muscle
22	chr15:60636200-60646000	Weak transcription	Brain Substantia Nigra	brain
23	chr15:60636200-60646400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:60636400-60638400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:60636400-60639400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:60636400-60639600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:60636400-60640000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr15:60636400-60640600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:60636400-60642600	Strong transcription	Placenta Amnion	Placenta Amnion
30	chr15:60636400-60644200	Strong transcription	NH-A	brain
31	chr15:60636400-60648600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:60636600-60639600	Strong transcription	Fetal Intestine Large	intestine
33	chr15:60636600-60642400	Strong transcription	HSMMtube	muscle
34	chr15:60636600-60657800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr15:60636800-60638400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:60636800-60638600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr15:60636800-60638600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:60636800-60638600	Weak transcription	GM12878-XiMat	blood
39	chr15:60636800-60639400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr15:60636800-60639400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:60636800-60639600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:60636800-60639800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:60636800-60642400	Weak transcription	Fetal Brain Male	brain
44	chr15:60637000-60638800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:60637000-60640400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:60637000-60641600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr15:60637000-60642400	Strong transcription	NHDF-Ad	bronchial
48	chr15:60637000-60643000	Strong transcription	NHLF	lung
49	chr15:60637000-60648200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:60637000-60654800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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