Variant report

Variant	rs11071522
Chromosome Location	chr15:60669804-60669805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:60669518-60669964	U87	brain:	n/a	n/a
2	POLR2A	chr15:60660175-60670573	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr15:60660802-60670612	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr15:60669575-60670035	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr15:60660167-60671313	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr15:60669793-60670562	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr15:60669415-60670056	HUVEC	blood vessel:	n/a	n/a
8	BCL3	chr15:60668469-60669954	A549	lung:	n/a	n/a
9	POLR2A	chr15:60660368-60671052	A549	lung:	n/a	n/a
10	POLR2A	chr15:60660453-60671190	U87	brain:	n/a	n/a
11	POLR2A	chr15:60669767-60671190	U87	brain:	n/a	n/a
12	POLR2A	chr15:60669550-60669807	ProgFib	skin:	n/a	n/a
13	POLR2A	chr15:60668620-60669949	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:60668084..60671543-chr15:60682381..60686230,3	K562	blood:
2	chr15:60664080..60667646-chr15:60669364..60673047,4	K562	blood:
3	chr15:60668896..60671622-chr15:60688917..60692325,3	K562	blood:
4	chr15:60664322..60667646-chr15:60668015..60673753,7	K562	blood:
5	chr15:60668869..60670469-chr15:60678055..60680003,2	K562	blood:

No data

Variant related genes	Relation type
ANXA2	TF binding region
ENSG00000182718	Chromatin interaction
ENSG00000240163	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10851677	0.84[AMR][1000 genomes]
rs12900365	0.81[AMR][1000 genomes]
rs1463329	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28437402	0.84[AMR][1000 genomes]
rs28508289	0.83[AMR][1000 genomes]
rs28642929	0.81[AMR][1000 genomes]
rs28676840	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4775260	0.84[AMR][1000 genomes]
rs4775261	0.84[AMR][1000 genomes]
rs7163836	0.91[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs8030787	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8030804	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60648000-60681000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:60649200-60681000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr15:60649400-60681000	Weak transcription	Primary T cells from cord blood	blood
4	chr15:60656800-60682600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:60660600-60671000	Transcr. at gene 5' and 3'	A549	lung
6	chr15:60660600-60678400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr15:60660600-60678400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:60660600-60680000	Genic enhancers	NHDF-Ad	bronchial
9	chr15:60660800-60671000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:60661200-60670800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:60661200-60681200	Genic enhancers	Osteobl	bone
12	chr15:60661400-60670800	Genic enhancers	Adipose Nuclei	Adipose
13	chr15:60662000-60676000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:60662000-60677200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:60662000-60681600	Genic enhancers	HMEC	breast
16	chr15:60662200-60670600	Genic enhancers	NHLF	lung
17	chr15:60662400-60670200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:60662400-60676800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:60662600-60670800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:60664000-60679600	Genic enhancers	NH-A	brain
21	chr15:60664400-60681200	Genic enhancers	HUVEC	blood vessel
22	chr15:60664800-60671600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr15:60664800-60671800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:60665400-60678200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:60665800-60671600	Strong transcription	Placenta	Placenta
26	chr15:60666000-60673200	Weak transcription	Small Intestine	intestine
27	chr15:60666200-60677200	Genic enhancers	HSMMtube	muscle
28	chr15:60666600-60679400	Genic enhancers	NHEK	skin
29	chr15:60666800-60670600	Genic enhancers	Hela-S3	cervix
30	chr15:60666800-60672200	Genic enhancers	Muscle Satellite Cultured Cells	--
31	chr15:60666800-60673400	Genic enhancers	Fetal Intestine Small	intestine
32	chr15:60666800-60681400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr15:60667400-60670200	Strong transcription	Fetal Intestine Large	intestine
34	chr15:60667400-60671800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr15:60667400-60680400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:60667400-60682000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:60667600-60681600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:60667600-60682400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:60667800-60671000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr15:60667800-60672200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:60667800-60676200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:60667800-60676200	Strong transcription	Fetal Stomach	stomach
43	chr15:60667800-60677400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr15:60667800-60680800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:60668000-60671800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:60668000-60672200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr15:60668000-60678400	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:60668000-60681200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr15:60668000-60681200	Weak transcription	Brain Anterior Caudate	brain
50	chr15:60668200-60671000	Strong transcription	Duodenum Mucosa	Duodenum

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