Variant report

Variant	rs1463329
Chromosome Location	chr15:60662048-60662049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:60659696..60662632-chr15:60674186..60675810,2	K562	blood:
2	chr15:60661349..60669397-chr15:60674958..60683269,11	MCF-7	breast:
3	chr15:60660685..60664137-chr15:60687847..60691351,5	K562	blood:
4	chr15:60654992..60658958-chr15:60661342..60663027,3	MCF-7	breast:
5	chr15:60659720..60662636-chr15:60685094..60687552,2	K562	blood:
6	chr15:60662032..60669365-chr15:60683457..60694611,25	MCF-7	breast:
7	chr15:60661044..60665019-chr15:60767961..60772025,5	K562	blood:
8	chr15:60661378..60663927-chr15:60670779..60673528,2	K562	blood:
9	chr15:60661044..60663922-chr15:60770069..60772025,2	K562	blood:
10	chr15:60659971..60669409-chr15:60678563..60693961,40	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182718	Chromatin interaction
ENSG00000240163	Chromatin interaction
ENSG00000245534	Chromatin interaction
ENSG00000128915	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1033028	0.84[AMR][1000 genomes]
rs10851677	0.88[AMR][1000 genomes]
rs11071522	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12900365	0.85[AMR][1000 genomes]
rs2136554	0.84[AMR][1000 genomes]
rs28437402	0.88[AMR][1000 genomes]
rs28508289	0.87[AMR][1000 genomes]
rs28642929	0.85[AMR][1000 genomes]
rs28676840	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4775260	0.88[AMR][1000 genomes]
rs4775261	0.88[AMR][1000 genomes]
rs7163836	0.87[AMR][1000 genomes]
rs7165285	0.81[AMR][1000 genomes]
rs8030787	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8030804	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60646400-60662200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:60647400-60669000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:60647800-60666400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:60648000-60681000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:60649200-60681000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr15:60649400-60663400	Weak transcription	Ovary	ovary
7	chr15:60649400-60668600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:60649400-60681000	Weak transcription	Primary T cells from cord blood	blood
9	chr15:60649600-60666600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:60651800-60667600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:60652800-60666800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:60656000-60663400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:60656000-60668000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:60656400-60662400	Weak transcription	Small Intestine	intestine
15	chr15:60656600-60662400	Weak transcription	Colonic Mucosa	Colon
16	chr15:60656600-60663000	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:60656600-60664200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:60656800-60662200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:60656800-60662200	Weak transcription	Left Ventricle	heart
20	chr15:60656800-60662200	Weak transcription	Right Ventricle	heart
21	chr15:60656800-60662400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:60656800-60662800	Weak transcription	Psoas Muscle	Psoas
23	chr15:60656800-60663400	Weak transcription	Spleen	Spleen
24	chr15:60656800-60664400	Weak transcription	Pancreas	Pancrea
25	chr15:60656800-60665400	Weak transcription	Gastric	stomach
26	chr15:60656800-60667000	Weak transcription	Primary B cells from cord blood	blood
27	chr15:60656800-60667200	Weak transcription	Fetal Kidney	kidney
28	chr15:60656800-60667400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr15:60656800-60667800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr15:60656800-60682600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr15:60657000-60662400	Weak transcription	Stomach Mucosa	stomach
32	chr15:60657000-60663000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:60657000-60665800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:60657000-60668800	Weak transcription	Liver	Liver
35	chr15:60657200-60662400	Weak transcription	Fetal Lung	lung
36	chr15:60657200-60662400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr15:60657800-60663200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:60660600-60662200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:60660600-60662400	Enhancers	Fetal Heart	heart
40	chr15:60660600-60662600	Genic enhancers	Hela-S3	cervix
41	chr15:60660600-60662800	Genic enhancers	Muscle Satellite Cultured Cells	--
42	chr15:60660600-60662800	Strong transcription	Placenta	Placenta
43	chr15:60660600-60662800	Genic enhancers	NH-A	brain
44	chr15:60660600-60663000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:60660600-60663400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:60660600-60667000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:60660600-60671000	Transcr. at gene 5' and 3'	A549	lung
48	chr15:60660600-60678400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr15:60660600-60678400	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr15:60660600-60680000	Genic enhancers	NHDF-Ad	bronchial

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