Variant report

Variant	rs28508289
Chromosome Location	chr15:60637412-60637413
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:60636624..60638286-chr15:60651489..60653321,2	K562	blood:
2	chr15:60631638..60634015-chr15:60636412..60639111,3	K562	blood:
3	chr15:60636392..60638223-chr15:60686045..60688598,2	K562	blood:
4	chr15:60628641..60631521-chr15:60635150..60637582,2	K562	blood:
5	chr15:60630021..60635079-chr15:60635150..60637912,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1033028	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10851677	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11071522	0.83[AMR][1000 genomes]
rs12900365	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1463329	0.87[AMR][1000 genomes]
rs2136554	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28437402	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28642929	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28676840	0.88[AMR][1000 genomes]
rs28771688	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28870083	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4775260	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4775261	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7163836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7165285	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8030787	0.88[AMR][1000 genomes]
rs8030804	0.88[AMR][1000 genomes]
rs8033985	0.92[ASN][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60623200-60639400	Weak transcription	Fetal Heart	heart
2	chr15:60628600-60637600	Weak transcription	Liver	Liver
3	chr15:60631200-60637800	Weak transcription	Psoas Muscle	Psoas
4	chr15:60631200-60637800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:60632800-60638000	Weak transcription	NHEK	skin
6	chr15:60633000-60638200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:60633000-60638200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:60633000-60651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:60633200-60637800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:60633200-60639600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:60633400-60638200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:60633400-60639600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:60633400-60639600	Weak transcription	HepG2	liver
14	chr15:60634000-60638800	Weak transcription	Fetal Kidney	kidney
15	chr15:60634400-60638400	Weak transcription	Stomach Mucosa	stomach
16	chr15:60634600-60637800	Weak transcription	Fetal Intestine Small	intestine
17	chr15:60634600-60638200	Weak transcription	Primary T cells from cord blood	blood
18	chr15:60634600-60651200	Genic enhancers	A549	lung
19	chr15:60634800-60638400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr15:60635200-60637600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:60635200-60637800	Weak transcription	Small Intestine	intestine
22	chr15:60635200-60638800	Weak transcription	K562	blood
23	chr15:60635400-60637600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr15:60635400-60638000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr15:60635600-60637800	Weak transcription	Hela-S3	cervix
26	chr15:60635600-60650000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:60635800-60637600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr15:60635800-60638200	Weak transcription	Fetal Lung	lung
29	chr15:60635800-60639600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:60635800-60641600	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr15:60636000-60637800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:60636000-60637800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:60636000-60638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:60636000-60642600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:60636000-60642600	Strong transcription	Osteobl	bone
36	chr15:60636000-60642800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:60636000-60651800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr15:60636200-60637600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:60636200-60637600	Weak transcription	Spleen	Spleen
40	chr15:60636200-60637800	Weak transcription	Primary B cells from cord blood	blood
41	chr15:60636200-60637800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:60636200-60637800	Weak transcription	Pancreas	Pancrea
43	chr15:60636200-60638000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:60636200-60638400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr15:60636200-60642400	Weak transcription	Brain Hippocampus Middle	brain
46	chr15:60636200-60642800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr15:60636200-60643600	Strong transcription	HSMM	muscle
48	chr15:60636200-60646000	Weak transcription	Brain Substantia Nigra	brain
49	chr15:60636200-60646400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:60636400-60637800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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