Variant report

Variant	rs7163836
Chromosome Location	chr15:60640228-60640229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1033028	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10851677	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11071522	0.91[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs12900365	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1463329	0.87[AMR][1000 genomes]
rs2136554	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28437402	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28508289	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28642929	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28676840	0.88[AMR][1000 genomes]
rs28771688	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28870083	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4775260	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4775261	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165285	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8030787	0.86[CEU][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes]
rs8030804	0.88[AMR][1000 genomes]
rs8033985	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7163836	ANXA2	cis	parietal	SCAN

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60633000-60651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:60634600-60651200	Genic enhancers	A549	lung
3	chr15:60635600-60650000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:60635800-60641600	Strong transcription	Muscle Satellite Cultured Cells	--
5	chr15:60636000-60642600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:60636000-60642600	Strong transcription	Osteobl	bone
7	chr15:60636000-60642800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:60636000-60651800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:60636200-60642400	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:60636200-60642800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:60636200-60643600	Strong transcription	HSMM	muscle
12	chr15:60636200-60646000	Weak transcription	Brain Substantia Nigra	brain
13	chr15:60636200-60646400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:60636400-60640600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:60636400-60642600	Strong transcription	Placenta Amnion	Placenta Amnion
16	chr15:60636400-60644200	Strong transcription	NH-A	brain
17	chr15:60636400-60648600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:60636600-60642400	Strong transcription	HSMMtube	muscle
19	chr15:60636600-60657800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr15:60636800-60642400	Weak transcription	Fetal Brain Male	brain
21	chr15:60637000-60640400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:60637000-60641600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:60637000-60642400	Strong transcription	NHDF-Ad	bronchial
24	chr15:60637000-60643000	Strong transcription	NHLF	lung
25	chr15:60637000-60648200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:60637000-60654800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr15:60637200-60641600	Strong transcription	Gastric	stomach
28	chr15:60637200-60641600	Strong transcription	Left Ventricle	heart
29	chr15:60637200-60641600	Strong transcription	Right Ventricle	heart
30	chr15:60637200-60642400	Strong transcription	Fetal Muscle Leg	muscle
31	chr15:60637200-60642600	Strong transcription	Adipose Nuclei	Adipose
32	chr15:60637200-60642600	Strong transcription	Duodenum Mucosa	Duodenum
33	chr15:60637200-60642600	Strong transcription	HUVEC	blood vessel
34	chr15:60637200-60649600	Strong transcription	Esophagus	oesophagus
35	chr15:60637200-60649800	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr15:60637200-60652800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:60637200-60653600	Strong transcription	Placenta	Placenta
38	chr15:60637200-60654000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr15:60637200-60656800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:60637200-60656800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:60637400-60643400	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:60637400-60645600	Strong transcription	HMEC	breast
43	chr15:60637400-60649600	Strong transcription	Colonic Mucosa	Colon
44	chr15:60637400-60658000	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:60637600-60641200	Strong transcription	Liver	Liver
46	chr15:60637600-60641600	Strong transcription	Spleen	Spleen
47	chr15:60637600-60642600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:60637600-60645600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr15:60637600-60647200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:60637600-60650200	Strong transcription	Sigmoid Colon	Sigmoid Colon

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