Variant report

Variant	rs4775261
Chromosome Location	chr15:60630902-60630903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1033028	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10851677	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11071522	0.91[CEU][hapmap];0.84[AMR][1000 genomes]
rs12900365	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1463329	0.88[AMR][1000 genomes]
rs2136554	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28437402	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28508289	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28642929	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28676840	0.89[AMR][1000 genomes]
rs28771688	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28870083	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4775260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163836	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165285	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8030787	0.86[CEU][hapmap];0.85[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes]
rs8030804	0.89[AMR][1000 genomes]
rs8033985	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20296	chr15:60623455-60632031	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4775261	ANXA2	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60623200-60639400	Weak transcription	Fetal Heart	heart
2	chr15:60626400-60636200	Weak transcription	HSMM	muscle
3	chr15:60627200-60635400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:60627800-60635600	Weak transcription	Fetal Stomach	stomach
5	chr15:60627800-60635800	Weak transcription	NHDF-Ad	bronchial
6	chr15:60627800-60637200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:60628600-60632600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:60628600-60632800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:60628600-60635400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:60628600-60637600	Weak transcription	Liver	Liver
11	chr15:60628800-60631200	Weak transcription	A549	lung
12	chr15:60629400-60636400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:60630000-60631000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:60630000-60631400	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:60630000-60631400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:60630600-60632800	Enhancers	HepG2	liver
17	chr15:60630800-60631000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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