Variant report

Variant	rs12900365
Chromosome Location	chr15:60644463-60644464
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:60642299-60649868	U87	brain:	n/a	n/a
2	POLR2A	chr15:60644032-60646633	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr15:60632288-60649793	U87	brain:	n/a	n/a
4	POLR2A	chr15:60642444-60645187	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr15:60642354-60646536	U87	brain:	n/a	n/a
6	POLR2A	chr15:60644092-60644704	HUVEC	blood vessel:	n/a	n/a
7	POLR2A	chr15:60640806-60646348	PANC-1	pancreas:	n/a	n/a
8	POLR2A	chr15:60643926-60645367	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr15:60640890-60648672	PANC-1	pancreas:	n/a	n/a
10	POLR2A	chr15:60644349-60644651	K562	blood:	n/a	n/a
11	POLR2A	chr15:60642437-60645032	K562	blood:	n/a	n/a
12	POLR2A	chr15:60641964-60645304	Hela-S3	cervix:	n/a	n/a
13	BCL3	chr15:60644015-60645097	A549	lung:	n/a	n/a
14	POLR2A	chr15:60642355-60645141	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr15:60644417-60644649	A549	lung:	n/a	n/a
16	POLR2A	chr15:60644291-60644706	ProgFib	skin:	n/a	n/a
17	POLR2A	chr15:60642400-60646477	A549	lung:	n/a	n/a
18	POLR2A	chr15:60644330-60644753	A549	lung:	n/a	n/a
19	POLR2A	chr15:60644065-60644524	ECC-1	luminal epithelium:	n/a	n/a
20	POLR2A	chr15:60642104-60646536	U87	brain:	n/a	n/a
21	POLR2A	chr15:60644217-60644548	SK-N-SH	brain:	n/a	n/a
22	POLR2A	chr15:60644422-60644621	A549	lung:	n/a	n/a
23	POLR2A	chr15:60644401-60644688	A549	lung:	n/a	n/a
24	POLR2A	chr15:60640865-60648721	SK-N-SH	brain:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60643760..60646318-chr15:60647348..60649843,3	K562	blood:

No data

Variant related genes	Relation type
ANXA2	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1033028	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10851677	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11071522	0.81[AMR][1000 genomes]
rs1463329	0.85[AMR][1000 genomes]
rs2136554	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28437402	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28508289	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28642929	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28676840	0.86[AMR][1000 genomes]
rs28771688	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28870083	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4775260	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775261	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7163836	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7165285	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8030787	0.86[AMR][1000 genomes]
rs8030804	0.86[AMR][1000 genomes]
rs8033985	0.83[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60633000-60651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:60634600-60651200	Genic enhancers	A549	lung
3	chr15:60635600-60650000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:60636000-60651800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:60636200-60646000	Weak transcription	Brain Substantia Nigra	brain
6	chr15:60636200-60646400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:60636400-60648600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:60636600-60657800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:60637000-60648200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:60637000-60654800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:60637200-60649600	Strong transcription	Esophagus	oesophagus
12	chr15:60637200-60649800	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr15:60637200-60652800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:60637200-60653600	Strong transcription	Placenta	Placenta
15	chr15:60637200-60654000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr15:60637200-60656800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:60637200-60656800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:60637400-60645600	Strong transcription	HMEC	breast
19	chr15:60637400-60649600	Strong transcription	Colonic Mucosa	Colon
20	chr15:60637400-60658000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:60637600-60645600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:60637600-60647200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:60637600-60650200	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:60637600-60651400	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:60637600-60658000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr15:60637800-60645600	Strong transcription	Hela-S3	cervix
27	chr15:60637800-60647600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:60637800-60649400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:60637800-60649400	Strong transcription	Ovary	ovary
30	chr15:60637800-60649600	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:60637800-60650000	Strong transcription	Fetal Intestine Small	intestine
32	chr15:60637800-60652400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:60638000-60646000	Weak transcription	Brain Angular Gyrus	brain
34	chr15:60638000-60654200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:60638000-60654600	Strong transcription	NHEK	skin
36	chr15:60638000-60655000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr15:60638200-60649600	Strong transcription	Colon Smooth Muscle	Colon
38	chr15:60638200-60649600	Strong transcription	Fetal Lung	lung
39	chr15:60638200-60650800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr15:60638200-60655000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:60638400-60644800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:60638400-60649200	Strong transcription	Stomach Smooth Muscle	stomach
43	chr15:60638400-60651800	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:60638400-60656800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr15:60638600-60648400	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:60638600-60649800	Strong transcription	GM12878-XiMat	blood
47	chr15:60639000-60645600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr15:60639000-60649600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:60639600-60656800	Strong transcription	HepG2	liver
50	chr15:60639800-60646400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood

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