Variant report

Variant	rs7165285
Chromosome Location	chr15:60619292-60619293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60209749..60210266-chr15:60618767..60619600,2	MCF-7	breast:
2	chr15:60209756..60210383-chr15:60618737..60619952,3	K562	blood:
3	chr15:59983231..59984005-chr15:60618723..60619489,3	K562	blood:
4	chr15:60578723..60579576-chr15:60618794..60619434,2	MCF-7	breast:
5	chr15:60043711..60044614-chr15:60618768..60619694,2	MCF-7	breast:
6	chr15:60613168..60616149-chr15:60617652..60620120,3	K562	blood:
7	chr15:59982442..59985079-chr15:60617660..60619822,3	K562	blood:
8	chr15:60504443..60505284-chr15:60618698..60619648,2	MCF-7	breast:
9	chr15:60017218..60017853-chr15:60618748..60619637,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1033028	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10851677	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11071516	0.87[AFR][1000 genomes]
rs12900365	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1463329	0.81[AMR][1000 genomes]
rs2136554	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28437402	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28508289	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28642929	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28676840	0.82[AMR][1000 genomes]
rs28771688	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28870083	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2899656	0.86[AFR][1000 genomes]
rs4775260	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775261	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7163836	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8030787	0.82[AMR][1000 genomes]
rs8030804	0.82[AMR][1000 genomes]
rs8033985	0.94[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60616000-60619600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr15:60617000-60619400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:60618600-60619600	Bivalent Enhancer	A549	lung
4	chr15:60619000-60619600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:60619200-60619400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:60619200-60619600	Bivalent Enhancer	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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