Variant report

Variant	rs28437402
Chromosome Location	chr15:60629172-60629173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1033028	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10851677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11071522	0.84[AMR][1000 genomes]
rs12900365	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1463329	0.88[AMR][1000 genomes]
rs2136554	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28508289	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28642929	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28676840	0.89[AMR][1000 genomes]
rs28771688	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28870083	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4775260	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775261	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7163836	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7165285	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8030787	0.89[AMR][1000 genomes]
rs8030804	0.89[AMR][1000 genomes]
rs8033985	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20296	chr15:60623455-60632031	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60623200-60639400	Weak transcription	Fetal Heart	heart
2	chr15:60626400-60636200	Weak transcription	HSMM	muscle
3	chr15:60627200-60635400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:60627800-60635600	Weak transcription	Fetal Stomach	stomach
5	chr15:60627800-60635800	Weak transcription	NHDF-Ad	bronchial
6	chr15:60627800-60637200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:60628400-60629200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:60628600-60632600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:60628600-60632800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:60628600-60635400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:60628600-60637600	Weak transcription	Liver	Liver
12	chr15:60628800-60630000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr15:60628800-60631200	Weak transcription	A549	lung
14	chr15:60629000-60629400	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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