Variant report

Variant	rs1033028
Chromosome Location	chr15:60616935-60616936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10851677	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11071522	0.95[CEU][hapmap]
rs12900365	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1463329	0.84[AMR][1000 genomes]
rs2136554	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28437402	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28508289	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28642929	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28676840	0.85[AMR][1000 genomes]
rs28771688	0.86[EUR][1000 genomes]
rs28870083	0.83[EUR][1000 genomes]
rs4775260	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4775261	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7163836	0.95[CEU][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7165285	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8030787	0.90[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes]
rs8030804	0.85[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1033028	ANXA2	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60611600-60617400	Weak transcription	Aorta	Aorta
2	chr15:60615000-60617000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:60615600-60618000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr15:60616000-60617000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:60616000-60619200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr15:60616000-60619600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr15:60616200-60619200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr15:60616400-60619000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr15:60616600-60617400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr15:60616600-60617600	Bivalent Enhancer	A549	lung
11	chr15:60616600-60618800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr15:60616800-60617000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:60616800-60617000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:60616800-60617400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr15:60616800-60617400	Bivalent Enhancer	Fetal Lung	lung
16	chr15:60616800-60617800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links