Variant report

Variant	rs28676840
Chromosome Location	chr15:60664843-60664844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:60661349..60669397-chr15:60674958..60683269,11	MCF-7	breast:
2	chr15:60664452..60668362-chr15:60674188..60678452,3	MCF-7	breast:
3	chr15:60662032..60669365-chr15:60683457..60694611,25	MCF-7	breast:
4	chr15:60661044..60665019-chr15:60767961..60772025,5	K562	blood:
5	chr15:60664251..60667844-chr15:60688071..60693043,5	K562	blood:
6	chr15:60663405..60665055-chr15:60665417..60667717,2	MCF-7	breast:
7	chr15:60659971..60669409-chr15:60678563..60693961,40	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182718	Chromatin interaction
ENSG00000240163	Chromatin interaction
ENSG00000245534	Chromatin interaction
ENSG00000128915	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1033028	0.85[AMR][1000 genomes]
rs10851677	0.89[AMR][1000 genomes]
rs11071522	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12900365	0.86[AMR][1000 genomes]
rs1463329	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2136554	0.85[AMR][1000 genomes]
rs28437402	0.89[AMR][1000 genomes]
rs28508289	0.88[AMR][1000 genomes]
rs28642929	0.86[AMR][1000 genomes]
rs4775260	0.89[AMR][1000 genomes]
rs4775261	0.89[AMR][1000 genomes]
rs7163836	0.88[AMR][1000 genomes]
rs7165285	0.82[AMR][1000 genomes]
rs8030787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8030804	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60647400-60669000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:60647800-60666400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:60648000-60681000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:60649200-60681000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:60649400-60668600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:60649400-60681000	Weak transcription	Primary T cells from cord blood	blood
7	chr15:60649600-60666600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:60651800-60667600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:60652800-60666800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:60656000-60668000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr15:60656800-60665400	Weak transcription	Gastric	stomach
12	chr15:60656800-60667000	Weak transcription	Primary B cells from cord blood	blood
13	chr15:60656800-60667200	Weak transcription	Fetal Kidney	kidney
14	chr15:60656800-60667400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr15:60656800-60667800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr15:60656800-60682600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:60657000-60665800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:60657000-60668800	Weak transcription	Liver	Liver
19	chr15:60660600-60667000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:60660600-60671000	Transcr. at gene 5' and 3'	A549	lung
21	chr15:60660600-60678400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr15:60660600-60678400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr15:60660600-60680000	Genic enhancers	NHDF-Ad	bronchial
24	chr15:60660800-60666000	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:60660800-60671000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:60661200-60666200	Genic enhancers	NHEK	skin
27	chr15:60661200-60669200	Enhancers	Right Atrium	heart
28	chr15:60661200-60669400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:60661200-60670800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:60661200-60681200	Genic enhancers	Osteobl	bone
31	chr15:60661400-60670800	Genic enhancers	Adipose Nuclei	Adipose
32	chr15:60661800-60669400	Strong transcription	K562	blood
33	chr15:60662000-60676000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:60662000-60677200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:60662000-60681600	Genic enhancers	HMEC	breast
36	chr15:60662200-60667000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr15:60662200-60667000	Genic enhancers	HepG2	liver
38	chr15:60662200-60668400	Enhancers	Right Ventricle	heart
39	chr15:60662200-60669400	Genic enhancers	Placenta Amnion	Placenta Amnion
40	chr15:60662200-60670600	Genic enhancers	NHLF	lung
41	chr15:60662400-60665200	Strong transcription	Fetal Lung	lung
42	chr15:60662400-60665400	Enhancers	Small Intestine	intestine
43	chr15:60662400-60668000	Strong transcription	Colonic Mucosa	Colon
44	chr15:60662400-60670200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:60662400-60676800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:60662600-60665600	Enhancers	Left Ventricle	heart
47	chr15:60662600-60667000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:60662600-60670800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:60662800-60666400	Genic enhancers	Lung	lung
50	chr15:60662800-60666600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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